Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UAY entry

There are 2 chains in PDB entry 9UAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17PRO 446
B
 ARG 18VAL 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9UAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
69 71Right-handed 310
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
104 122Right-handed alpha
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
156 176Right-handed alpha
Helix 8
AA8
A
188 199Right-handed alpha
Helix 9
AA9
A
200 202Right-handed 310
Helix 10
AB1
A
203 216Right-handed alpha
Helix 11
AB2
A
232 236Right-handed 310
Helix 12
AB3
A
245 260Right-handed alpha
Helix 13
AB4
A
262 280Right-handed alpha
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
320 338Right-handed alpha
Helix 16
AB7
A
342 350Right-handed alpha
Helix 17
AB8
A
378 381Right-handed 310
Helix 18
AB9
A
421 445Right-handed alpha
Helix 19
AC1
B
21 34Right-handed alpha
Helix 20
AC2
B
53 68Right-handed alpha
Helix 21
AC3
B
69 71Right-handed 310
Helix 22
AC4
B
79 81Right-handed 310
Helix 23
AC5
B
104 122Right-handed alpha
Helix 24
AC6
B
153 155Right-handed 310
Helix 25
AC7
B
156 176Right-handed alpha
Helix 26
AC8
B
188 199Right-handed alpha
Helix 27
AC9
B
200 202Right-handed 310
Helix 28
AD1
B
203 216Right-handed alpha
Helix 29
AD2
B
245 254Right-handed alpha
Helix 30
AD3
B
262 280Right-handed alpha
Helix 31
AD4
B
295 299Right-handed 310
Helix 32
AD5
B
320 338Right-handed alpha
Helix 33
AD6
B
342 350Right-handed alpha
Helix 34
AD7
B
378 381Right-handed 310
Helix 35
AD8
B
421 441Right-handed alpha
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There are 8 sheets in PDB entry 9UAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
132 140parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
41 50anti-parallel
Strand 5
A
383 387anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
82 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
410 415anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
364 367parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 290first strand
Strand 2
A
307 314anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 99first strand
Strand 2
B
132 140parallel
Strand 3
B
143 151anti-parallel
Strand 4
B
41 50anti-parallel
Strand 5
B
383 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
82 87anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 243first strand
Strand 2
B
410 415anti-parallel
Strand 3
B
399 404anti-parallel
Strand 4
B
364 367parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 290first strand
Strand 2
B
307 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il