Analysis of interatomic Contacts of Structural Units in PDB entry:
9UB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UB8 entry

There are 8 chains in PDB entry 9UB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 15	VAL 606
B	MET 1	ILE 394
E	GLY 15	VAL 606
D	MET 1	GLU 498
C	VAL 23	GLU 580
F	MET 1	ILE 394
G	MET 1	GLU 498
H	VAL 23	GLU 580

There are146 helices in PDB entry 9UB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed alpha
Helix 2	AA2	A	23	41	Right-handed alpha
Helix 3	AA3	A	68	83	Right-handed alpha
Helix 4	AA4	A	89	103	Right-handed alpha
Helix 5	AA5	A	149	164	Right-handed alpha
Helix 6	AA6	A	183	195	Right-handed alpha
Helix 7	AA7	A	227	231	Right-handed 310
Helix 8	AA8	A	234	248	Right-handed alpha
Helix 9	AA9	A	259	263	Right-handed 310
Helix 10	AB1	A	266	283	Right-handed alpha
Helix 11	AB2	A	291	296	Right-handed 310
Helix 12	AB3	A	315	331	Right-handed alpha
Helix 13	AB4	A	353	358	Right-handed alpha
Helix 14	AB5	A	358	378	Right-handed alpha
Helix 15	AB6	A	388	412	Right-handed alpha
Helix 16	AB7	A	419	430	Right-handed alpha
Helix 17	AB8	A	443	468	Right-handed alpha
Helix 18	AB9	A	468	480	Right-handed alpha
Helix 19	AC1	A	481	485	Right-handed 310
Helix 20	AC2	A	528	543	Right-handed alpha
Helix 21	AC3	A	546	556	Right-handed alpha
Helix 22	AC4	A	564	577	Right-handed alpha
Helix 23	AC5	A	579	588	Right-handed alpha
Helix 24	AC6	A	588	599	Right-handed alpha
Helix 25	AC7	B	3	23	Right-handed alpha
Helix 26	AC8	B	25	32	Right-handed alpha
Helix 27	AC9	B	42	54	Right-handed alpha
Helix 28	AD1	B	68	78	Right-handed alpha
Helix 29	AD2	B	80	106	Right-handed alpha
Helix 30	AD3	B	114	123	Right-handed alpha
Helix 31	AD4	B	123	133	Right-handed alpha
Helix 32	AD5	B	136	152	Right-handed alpha
Helix 33	AD6	B	156	170	Right-handed alpha
Helix 34	AD7	B	171	175	Right-handed 310
Helix 35	AD8	B	176	181	Right-handed alpha
Helix 36	AD9	B	186	212	Right-handed alpha
Helix 37	AE1	B	218	230	Right-handed alpha
Helix 38	AE2	B	242	247	Right-handed alpha
Helix 39	AE3	B	251	265	Right-handed alpha
Helix 40	AE4	B	266	273	Right-handed alpha
Helix 41	AE5	B	277	292	Right-handed alpha
Helix 42	AE6	B	297	306	Right-handed alpha
Helix 43	AE7	B	307	318	Right-handed 310
Helix 44	AE8	B	320	344	Right-handed alpha
Helix 45	AE9	B	349	381	Right-handed alpha
Helix 46	AF1	E	16	23	Right-handed alpha
Helix 47	AF2	E	23	41	Right-handed alpha
Helix 48	AF3	E	55	59	Right-handed 310
Helix 49	AF4	E	68	83	Right-handed alpha
Helix 50	AF5	E	89	102	Right-handed alpha
Helix 51	AF6	E	103	105	Right-handed 310
Helix 52	AF7	E	150	164	Right-handed alpha
Helix 53	AF8	E	183	195	Right-handed alpha
Helix 54	AF9	E	234	248	Right-handed alpha
Helix 55	AG1	E	259	263	Right-handed 310
Helix 56	AG2	E	266	283	Right-handed alpha
Helix 57	AG3	E	291	296	Right-handed 310
Helix 58	AG4	E	315	331	Right-handed alpha
Helix 59	AG5	E	353	358	Right-handed alpha
Helix 60	AG6	E	358	378	Right-handed alpha
Helix 61	AG7	E	388	412	Right-handed alpha
Helix 62	AG8	E	418	429	Right-handed alpha
Helix 63	AG9	E	443	468	Right-handed alpha
Helix 64	AH1	E	468	480	Right-handed alpha
Helix 65	AH2	E	481	485	Right-handed 310
Helix 66	AH3	E	528	543	Right-handed alpha
Helix 67	AH4	E	546	556	Right-handed alpha
Helix 68	AH5	E	564	577	Right-handed alpha
Helix 69	AH6	E	579	588	Right-handed alpha
Helix 70	AH7	E	588	598	Right-handed alpha
Helix 71	AH8	D	2	31	Right-handed alpha
Helix 72	AH9	D	39	48	Right-handed alpha
Helix 73	AI1	D	71	86	Right-handed alpha
Helix 74	AI2	D	100	109	Right-handed alpha
Helix 75	AI3	D	149	161	Right-handed alpha
Helix 76	AI4	D	163	169	Right-handed alpha
Helix 77	AI5	D	208	223	Right-handed alpha
Helix 78	AI6	D	253	259	Right-handed alpha
Helix 79	AI7	D	264	270	Right-handed alpha
Helix 80	AI8	D	341	356	Right-handed alpha
Helix 81	AI9	D	367	401	Right-handed alpha
Helix 82	AJ1	D	407	430	Right-handed alpha
Helix 83	AJ2	D	436	458	Right-handed alpha
Helix 84	AJ3	D	469	496	Right-handed alpha
Helix 85	AJ4	C	84	93	Right-handed alpha
Helix 86	AJ5	C	107	112	Right-handed alpha
Helix 87	AJ6	C	114	119	Right-handed 310
Helix 88	AJ7	C	136	155	Right-handed alpha
Helix 89	AJ8	C	156	162	Right-handed 310
Helix 90	AJ9	C	201	205	Right-handed 310
Helix 91	AK1	C	206	213	Right-handed alpha
Helix 92	AK2	C	220	225	Right-handed alpha
Helix 93	AK3	C	267	275	Right-handed alpha
Helix 94	AK4	C	314	319	Right-handed alpha
Helix 95	AK5	C	453	457	Right-handed alpha
Helix 96	AK6	C	549	573	Right-handed alpha
Helix 97	AK7	F	3	23	Right-handed alpha
Helix 98	AK8	F	25	32	Right-handed alpha
Helix 99	AK9	F	42	54	Right-handed alpha
Helix 100	AL1	F	68	77	Right-handed alpha
Helix 101	AL2	F	80	106	Right-handed alpha
Helix 102	AL3	F	114	123	Right-handed alpha
Helix 103	AL4	F	123	132	Right-handed alpha
Helix 104	AL5	F	136	152	Right-handed alpha
Helix 105	AL6	F	156	170	Right-handed alpha
Helix 106	AL7	F	171	175	Right-handed 310
Helix 107	AL8	F	176	182	Right-handed alpha
Helix 108	AL9	F	186	212	Right-handed alpha
Helix 109	AM1	F	218	223	Right-handed alpha
Helix 110	AM2	F	223	230	Right-handed alpha
Helix 111	AM3	F	239	244	Right-handed alpha
Helix 112	AM4	F	251	265	Right-handed alpha
Helix 113	AM5	F	266	273	Right-handed alpha
Helix 114	AM6	F	277	292	Right-handed alpha
Helix 115	AM7	F	297	306	Right-handed alpha
Helix 116	AM8	F	307	315	Right-handed 310
Helix 117	AM9	F	320	344	Right-handed alpha
Helix 118	AN1	F	349	381	Right-handed alpha
Helix 119	AN2	G	2	31	Right-handed alpha
Helix 120	AN3	G	39	48	Right-handed alpha
Helix 121	AN4	G	71	85	Right-handed alpha
Helix 122	AN5	G	100	108	Right-handed alpha
Helix 123	AN6	G	149	160	Right-handed alpha
Helix 124	AN7	G	163	169	Right-handed alpha
Helix 125	AN8	G	208	223	Right-handed alpha
Helix 126	AN9	G	253	260	Right-handed alpha
Helix 127	AO1	G	264	270	Right-handed alpha
Helix 128	AO2	G	338	340	Right-handed 310
Helix 129	AO3	G	341	356	Right-handed alpha
Helix 130	AO4	G	367	401	Right-handed alpha
Helix 131	AO5	G	407	430	Right-handed alpha
Helix 132	AO6	G	436	458	Right-handed alpha
Helix 133	AO7	G	469	497	Right-handed alpha
Helix 134	AO8	H	84	93	Right-handed alpha
Helix 135	AO9	H	107	112	Right-handed alpha
Helix 136	AP1	H	114	119	Right-handed 310
Helix 137	AP2	H	136	155	Right-handed alpha
Helix 138	AP3	H	156	162	Right-handed 310
Helix 139	AP4	H	163	167	Right-handed 310
Helix 140	AP5	H	206	213	Right-handed alpha
Helix 141	AP6	H	220	225	Right-handed alpha
Helix 142	AP7	H	268	274	Right-handed alpha
Helix 143	AP8	H	314	319	Right-handed alpha
Helix 144	AP9	H	453	457	Right-handed alpha
Helix 145	AQ1	H	506	510	Right-handed 310
Helix 146	AQ2	H	549	573	Right-handed alpha

There are 26 sheets in PDB entry 9UB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	350	352	anti-parallel
Strand 3	A	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	113	first strand
Strand 2	A	117	124	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	133	140	parallel
Strand 5	A	202	208	parallel
Strand 6	A	301	314	parallel
Strand 7	A	217	224	anti-parallel
Strand 8	A	252	253	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	602	603	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	C	576	577	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	350	352	anti-parallel
Strand 3	E	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	113	first strand
Strand 2	E	117	124	anti-parallel
Strand 3	E	172	178	anti-parallel
Strand 4	E	133	140	parallel
Strand 5	E	202	208	parallel
Strand 6	E	301	314	parallel
Strand 7	E	217	224	anti-parallel
Strand 8	E	252	254	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	441	442	first strand
Strand 2	E	601	603	parallel
Strand 3	E	488	489	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	98	first strand
Strand 2	D	55	62	parallel
Strand 3	D	115	120	parallel
Strand 4	D	134	139	parallel
Strand 5	D	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	237	first strand
Strand 2	D	189	198	parallel
Strand 3	D	278	284	parallel
Strand 4	D	321	325	parallel
Strand 5	D	313	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	334	336	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	125	129	anti-parallel
Strand 3	C	97	103	anti-parallel
Strand 4	C	235	245	anti-parallel
Strand 5	C	255	266	anti-parallel
Strand 6	C	49	59	anti-parallel
Strand 7	C	36	45	anti-parallel
Strand 8	C	334	337	parallel
Strand 9	C	362	363	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	188	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	313	first strand
Strand 2	C	376	381	anti-parallel
Strand 3	C	344	350	anti-parallel
Strand 4	C	353	355	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	401	first strand
Strand 2	C	408	416	anti-parallel
Strand 3	C	486	495	anti-parallel
Strand 4	C	435	445	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	464	first strand
Strand 2	C	473	481	anti-parallel
Strand 3	C	423	431	anti-parallel
Strand 4	C	516	521	anti-parallel
Strand 5	C	528	533	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	513	first strand
Strand 2	C	537	539	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	391	393	first strand
Strand 2	H	575	577	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	98	first strand
Strand 2	G	55	62	parallel
Strand 3	G	115	120	parallel
Strand 4	G	134	139	parallel
Strand 5	G	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	228	235	first strand
Strand 2	G	189	196	parallel
Strand 3	G	278	284	parallel
Strand 4	G	321	326	parallel
Strand 5	G	312	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	206	first strand
Strand 2	G	334	336	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	193	196	first strand
Strand 2	H	125	129	anti-parallel
Strand 3	H	97	103	anti-parallel
Strand 4	H	235	245	anti-parallel
Strand 5	H	255	267	anti-parallel
Strand 6	H	49	59	anti-parallel
Strand 7	H	36	45	anti-parallel
Strand 8	H	334	337	parallel
Strand 9	H	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	134	first strand
Strand 2	H	188	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	310	313	first strand
Strand 2	H	376	381	anti-parallel
Strand 3	H	344	350	anti-parallel
Strand 4	H	353	355	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	396	402	first strand
Strand 2	H	408	416	anti-parallel
Strand 3	H	486	495	anti-parallel
Strand 4	H	435	445	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	458	464	first strand
Strand 2	H	474	481	anti-parallel
Strand 3	H	423	429	anti-parallel
Strand 4	H	517	521	anti-parallel
Strand 5	H	528	533	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	511	513	first strand
Strand 2	H	537	539	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UB8