Analysis of interatomic Contacts of Structural Units in PDB entry:
9UB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UB9 entry

There are 2 chains in PDB entry 9UB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 196
B
 SER 1ILE 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9UB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 53Right-handed alpha
Helix 2
AA2
A
55 60Right-handed alpha
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
112 117Right-handed alpha
Helix 7
AA7
A
118 125Right-handed alpha
Helix 8
AA8
A
132 145Right-handed alpha
Helix 9
AA9
A
146 148Right-handed 310
Helix 10
AB1
A
151 168Right-handed alpha
Helix 11
AB2
A
168 180Right-handed alpha
Helix 12
AB3
B
8 11Right-handed 310
Helix 13
AB4
B
150 164Right-handed alpha
Helix 14
AB5
B
166 176Right-handed alpha
Helix 15
AB6
B
226 230Right-handed 310
Helix 16
AB7
B
254 261Right-handed 310
Helix 17
AB8
B
267 276Right-handed alpha
Helix 18
AB9
B
281 295Right-handed alpha
Helix 19
AC1
B
298 313Right-handed alpha
Helix 20
AC2
B
318 330Right-handed alpha
Helix 21
AC3
B
345 368Right-handed alpha
Helix 22
AC4
B
370 379Right-handed alpha
Helix 23
AC5
B
384 392Right-handed alpha
Helix 24
AC6
B
404 424Right-handed alpha
Helix 25
AC7
B
427 432Right-handed 310
Helix 26
AC8
B
504 510Right-handed alpha
Helix 27
AC9
B
519 523Right-handed 310
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There are 5 sheets in PDB entry 9UB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
18 22anti-parallel
Strand 3
B
32 39parallel
Strand 4
B
42 49anti-parallel
Strand 5
B
57 60anti-parallel
Strand 6
B
63 69anti-parallel
Strand 7
B
181 187anti-parallel
Strand 8
B
192 197anti-parallel
Strand 9
B
232 234anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
467 473anti-parallel
Strand 5
B
476 482anti-parallel
Strand 6
B
514 515anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 109first strand
Strand 2
B
115 125anti-parallel
Strand 3
B
128 134anti-parallel
Strand 4
B
139 145anti-parallel
Strand 5
B
75 81anti-parallel
Strand 6
B
213 214parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
95 98anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
458 459anti-parallel
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