Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UBF entry

There are 6 chains in PDB entry 9UBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 212ASP 241
A
 SER 243GLN 262
A
 GLN 264LYS 334
B
 LEU 210ASP 241
B
 SER 243GLN 262
B
 GLN 264LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9UBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 222Right-handed alpha
Helix 2
AA2
A
223 225Right-handed 310
Helix 3
AA3
A
241 253Right-handed alpha
Helix 4
AA4
A
260 267Right-handed alpha
Helix 5
AA5
A
272 276Right-handed 310
Helix 6
AA6
A
320 326Right-handed alpha
Helix 7
AA7
B
211 222Right-handed alpha
Helix 8
AA8
B
223 225Right-handed 310
Helix 9
AA9
B
241 253Right-handed alpha
Helix 10
AB1
B
260 267Right-handed alpha
Helix 11
AB2
B
272 276Right-handed 310
Helix 12
AB3
B
320 326Right-handed alpha
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There are 4 sheets in PDB entry 9UBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
239 240anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
294 300anti-parallel
Strand 5
A
305 308anti-parallel
Strand 6
A
314 317anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
239 240anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
327 332anti-parallel
Strand 3
B
281 285anti-parallel
Strand 4
B
294 300anti-parallel
Strand 5
B
305 308anti-parallel
Strand 6
B
314 317anti-parallel
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