Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UBG entry

There are 4 chains in PDB entry 9UBG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1045
C	MET 1	ALA 1045
D	MET 1	ALA 1045
B	MET 1	ALA 1045

There are176 helices in PDB entry 9UBG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed 310
Helix 3	AA3	A	39	44	Right-handed alpha
Helix 4	AA4	A	56	62	Right-handed alpha
Helix 5	AA5	A	63	75	Right-handed alpha
Helix 6	AA6	A	89	99	Right-handed alpha
Helix 7	AA7	A	107	113	Right-handed alpha
Helix 8	AA8	A	118	128	Right-handed alpha
Helix 9	AA9	A	140	149	Right-handed alpha
Helix 10	AB1	A	176	192	Right-handed alpha
Helix 11	AB2	A	248	267	Right-handed alpha
Helix 12	AB3	A	296	305	Right-handed alpha
Helix 13	AB4	A	308	317	Right-handed alpha
Helix 14	AB5	A	398	413	Right-handed alpha
Helix 15	AB6	A	421	430	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	A	442	446	Right-handed 310
Helix 18	AB9	A	458	473	Right-handed alpha
Helix 19	AC1	A	484	489	Right-handed 310
Helix 20	AC2	A	501	520	Right-handed alpha
Helix 21	AC3	A	534	539	Right-handed alpha
Helix 22	AC4	A	544	559	Right-handed alpha
Helix 23	AC5	A	571	579	Right-handed alpha
Helix 24	AC6	A	583	595	Right-handed alpha
Helix 25	AC7	A	616	631	Right-handed alpha
Helix 26	AC8	A	647	658	Right-handed alpha
Helix 27	AC9	A	681	695	Right-handed alpha
Helix 28	AD1	A	710	725	Right-handed alpha
Helix 29	AD2	A	740	749	Right-handed alpha
Helix 30	AD3	A	759	763	Right-handed 310
Helix 31	AD4	A	770	777	Right-handed alpha
Helix 32	AD5	A	788	794	Right-handed alpha
Helix 33	AD6	A	795	806	Right-handed alpha
Helix 34	AD7	A	818	822	Right-handed 310
Helix 35	AD8	A	826	840	Right-handed alpha
Helix 36	AD9	A	846	860	Right-handed alpha
Helix 37	AE1	A	867	884	Right-handed alpha
Helix 38	AE2	A	888	892	Right-handed 310
Helix 39	AE3	A	893	897	Right-handed 310
Helix 40	AE4	A	900	909	Right-handed alpha
Helix 41	AE5	A	940	947	Right-handed alpha
Helix 42	AE6	A	951	963	Right-handed alpha
Helix 43	AE7	A	963	978	Right-handed alpha
Helix 44	AE8	A	984	990	Right-handed alpha
Helix 45	AE9	C	11	24	Right-handed alpha
Helix 46	AF1	C	33	37	Right-handed 310
Helix 47	AF2	C	39	44	Right-handed alpha
Helix 48	AF3	C	56	62	Right-handed alpha
Helix 49	AF4	C	63	75	Right-handed alpha
Helix 50	AF5	C	89	99	Right-handed alpha
Helix 51	AF6	C	107	114	Right-handed alpha
Helix 52	AF7	C	118	128	Right-handed alpha
Helix 53	AF8	C	140	149	Right-handed alpha
Helix 54	AF9	C	176	192	Right-handed alpha
Helix 55	AG1	C	248	267	Right-handed alpha
Helix 56	AG2	C	296	305	Right-handed alpha
Helix 57	AG3	C	308	317	Right-handed alpha
Helix 58	AG4	C	398	413	Right-handed alpha
Helix 59	AG5	C	421	430	Right-handed alpha
Helix 60	AG6	C	431	437	Right-handed alpha
Helix 61	AG7	C	442	446	Right-handed 310
Helix 62	AG8	C	458	473	Right-handed alpha
Helix 63	AG9	C	484	489	Right-handed 310
Helix 64	AH1	C	501	520	Right-handed alpha
Helix 65	AH2	C	534	539	Right-handed alpha
Helix 66	AH3	C	544	559	Right-handed alpha
Helix 67	AH4	C	571	579	Right-handed alpha
Helix 68	AH5	C	583	595	Right-handed alpha
Helix 69	AH6	C	616	631	Right-handed alpha
Helix 70	AH7	C	647	658	Right-handed alpha
Helix 71	AH8	C	681	695	Right-handed alpha
Helix 72	AH9	C	710	725	Right-handed alpha
Helix 73	AI1	C	740	749	Right-handed alpha
Helix 74	AI2	C	759	763	Right-handed 310
Helix 75	AI3	C	770	777	Right-handed alpha
Helix 76	AI4	C	788	794	Right-handed alpha
Helix 77	AI5	C	795	806	Right-handed alpha
Helix 78	AI6	C	818	822	Right-handed 310
Helix 79	AI7	C	826	840	Right-handed alpha
Helix 80	AI8	C	846	860	Right-handed alpha
Helix 81	AI9	C	867	884	Right-handed alpha
Helix 82	AJ1	C	888	892	Right-handed 310
Helix 83	AJ2	C	893	897	Right-handed 310
Helix 84	AJ3	C	900	909	Right-handed alpha
Helix 85	AJ4	C	940	947	Right-handed alpha
Helix 86	AJ5	C	951	963	Right-handed alpha
Helix 87	AJ6	C	963	978	Right-handed alpha
Helix 88	AJ7	C	984	990	Right-handed alpha
Helix 89	AJ8	D	11	24	Right-handed alpha
Helix 90	AJ9	D	33	37	Right-handed 310
Helix 91	AK1	D	39	44	Right-handed alpha
Helix 92	AK2	D	56	62	Right-handed alpha
Helix 93	AK3	D	63	75	Right-handed alpha
Helix 94	AK4	D	89	99	Right-handed alpha
Helix 95	AK5	D	107	114	Right-handed alpha
Helix 96	AK6	D	118	128	Right-handed alpha
Helix 97	AK7	D	140	149	Right-handed alpha
Helix 98	AK8	D	176	192	Right-handed alpha
Helix 99	AK9	D	248	267	Right-handed alpha
Helix 100	AL1	D	296	305	Right-handed alpha
Helix 101	AL2	D	308	317	Right-handed alpha
Helix 102	AL3	D	398	413	Right-handed alpha
Helix 103	AL4	D	421	430	Right-handed alpha
Helix 104	AL5	D	431	437	Right-handed alpha
Helix 105	AL6	D	442	446	Right-handed 310
Helix 106	AL7	D	458	473	Right-handed alpha
Helix 107	AL8	D	484	489	Right-handed 310
Helix 108	AL9	D	501	520	Right-handed alpha
Helix 109	AM1	D	534	539	Right-handed alpha
Helix 110	AM2	D	544	559	Right-handed alpha
Helix 111	AM3	D	571	579	Right-handed alpha
Helix 112	AM4	D	583	595	Right-handed alpha
Helix 113	AM5	D	616	631	Right-handed alpha
Helix 114	AM6	D	647	658	Right-handed alpha
Helix 115	AM7	D	681	695	Right-handed alpha
Helix 116	AM8	D	710	725	Right-handed alpha
Helix 117	AM9	D	740	749	Right-handed alpha
Helix 118	AN1	D	759	763	Right-handed 310
Helix 119	AN2	D	770	777	Right-handed alpha
Helix 120	AN3	D	788	794	Right-handed alpha
Helix 121	AN4	D	795	806	Right-handed alpha
Helix 122	AN5	D	818	822	Right-handed 310
Helix 123	AN6	D	826	840	Right-handed alpha
Helix 124	AN7	D	846	860	Right-handed alpha
Helix 125	AN8	D	867	884	Right-handed alpha
Helix 126	AN9	D	888	892	Right-handed 310
Helix 127	AO1	D	893	897	Right-handed 310
Helix 128	AO2	D	900	909	Right-handed alpha
Helix 129	AO3	D	940	947	Right-handed alpha
Helix 130	AO4	D	951	963	Right-handed alpha
Helix 131	AO5	D	963	978	Right-handed alpha
Helix 132	AO6	D	984	990	Right-handed alpha
Helix 133	AO7	B	11	24	Right-handed alpha
Helix 134	AO8	B	33	37	Right-handed 310
Helix 135	AO9	B	39	44	Right-handed alpha
Helix 136	AP1	B	56	62	Right-handed alpha
Helix 137	AP2	B	63	75	Right-handed alpha
Helix 138	AP3	B	89	99	Right-handed alpha
Helix 139	AP4	B	107	114	Right-handed alpha
Helix 140	AP5	B	118	128	Right-handed alpha
Helix 141	AP6	B	140	149	Right-handed alpha
Helix 142	AP7	B	176	192	Right-handed alpha
Helix 143	AP8	B	248	267	Right-handed alpha
Helix 144	AP9	B	296	305	Right-handed alpha
Helix 145	AQ1	B	308	317	Right-handed alpha
Helix 146	AQ2	B	398	413	Right-handed alpha
Helix 147	AQ3	B	421	430	Right-handed alpha
Helix 148	AQ4	B	431	437	Right-handed alpha
Helix 149	AQ5	B	442	446	Right-handed 310
Helix 150	AQ6	B	458	473	Right-handed alpha
Helix 151	AQ7	B	484	489	Right-handed 310
Helix 152	AQ8	B	501	520	Right-handed alpha
Helix 153	AQ9	B	534	539	Right-handed alpha
Helix 154	AR1	B	544	559	Right-handed alpha
Helix 155	AR2	B	571	579	Right-handed alpha
Helix 156	AR3	B	583	595	Right-handed alpha
Helix 157	AR4	B	616	631	Right-handed alpha
Helix 158	AR5	B	647	658	Right-handed alpha
Helix 159	AR6	B	681	695	Right-handed alpha
Helix 160	AR7	B	710	725	Right-handed alpha
Helix 161	AR8	B	740	749	Right-handed alpha
Helix 162	AR9	B	759	763	Right-handed 310
Helix 163	AS1	B	770	777	Right-handed alpha
Helix 164	AS2	B	788	794	Right-handed alpha
Helix 165	AS3	B	795	806	Right-handed alpha
Helix 166	AS4	B	818	822	Right-handed 310
Helix 167	AS5	B	826	840	Right-handed alpha
Helix 168	AS6	B	846	860	Right-handed alpha
Helix 169	AS7	B	867	884	Right-handed alpha
Helix 170	AS8	B	888	892	Right-handed 310
Helix 171	AS9	B	893	897	Right-handed 310
Helix 172	AT1	B	900	909	Right-handed alpha
Helix 173	AT2	B	940	947	Right-handed alpha
Helix 174	AT3	B	951	963	Right-handed alpha
Helix 175	AT4	B	963	978	Right-handed alpha
Helix 176	AT5	B	984	990	Right-handed alpha

There are 32 sheets in PDB entry 9UBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	4	7	parallel
Strand 4	A	78	80	parallel
Strand 5	A	102	103	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	155	159	anti-parallel
Strand 3	A	197	201	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	228	first strand
Strand 2	A	207	215	anti-parallel
Strand 3	A	272	278	anti-parallel
Strand 4	A	289	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	236	237	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	343	first strand
Strand 2	A	388	396	anti-parallel
Strand 3	A	369	372	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	414	416	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	528	first strand
Strand 2	A	564	569	parallel
Strand 3	A	599	604	parallel
Strand 4	A	634	637	parallel
Strand 5	A	661	667	parallel
Strand 6	A	699	703	parallel
Strand 7	A	729	732	parallel
Strand 8	A	754	757	parallel
Strand 9	A	525	528	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	997	1003	first strand
Strand 2	A	1006	1015	anti-parallel
Strand 3	A	1023	1030	anti-parallel
Strand 4	A	1033	1040	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	27	32	parallel
Strand 3	C	4	7	parallel
Strand 4	C	78	80	parallel
Strand 5	C	102	103	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	155	159	anti-parallel
Strand 3	C	197	201	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	228	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	272	278	anti-parallel
Strand 4	C	289	290	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	236	237	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	343	first strand
Strand 2	C	388	396	anti-parallel
Strand 3	C	369	372	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	362	first strand
Strand 2	C	414	416	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	528	first strand
Strand 2	C	564	569	parallel
Strand 3	C	599	604	parallel
Strand 4	C	634	637	parallel
Strand 5	C	661	667	parallel
Strand 6	C	699	703	parallel
Strand 7	C	729	732	parallel
Strand 8	C	754	757	parallel
Strand 9	C	525	528	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	997	1003	first strand
Strand 2	C	1006	1015	anti-parallel
Strand 3	C	1023	1030	anti-parallel
Strand 4	C	1033	1040	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	27	32	parallel
Strand 3	D	4	7	parallel
Strand 4	D	78	80	parallel
Strand 5	D	102	103	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	155	159	anti-parallel
Strand 3	D	197	201	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	228	first strand
Strand 2	D	207	215	anti-parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	289	290	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	236	237	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	343	first strand
Strand 2	D	388	396	anti-parallel
Strand 3	D	369	372	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	362	first strand
Strand 2	D	414	416	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	528	first strand
Strand 2	D	564	569	parallel
Strand 3	D	599	604	parallel
Strand 4	D	634	637	parallel
Strand 5	D	661	667	parallel
Strand 6	D	699	703	parallel
Strand 7	D	729	732	parallel
Strand 8	D	754	757	parallel
Strand 9	D	525	528	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	998	1003	first strand
Strand 2	D	1006	1015	anti-parallel
Strand 3	D	1023	1030	anti-parallel
Strand 4	D	1033	1040	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	27	32	parallel
Strand 3	B	4	7	parallel
Strand 4	B	78	80	parallel
Strand 5	B	102	103	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	155	159	anti-parallel
Strand 3	B	197	201	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	228	first strand
Strand 2	B	207	215	anti-parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	289	290	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	236	237	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	343	first strand
Strand 2	B	388	396	anti-parallel
Strand 3	B	369	372	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	414	416	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	528	first strand
Strand 2	B	564	569	parallel
Strand 3	B	599	604	parallel
Strand 4	B	634	637	parallel
Strand 5	B	661	667	parallel
Strand 6	B	699	703	parallel
Strand 7	B	729	732	parallel
Strand 8	B	754	757	parallel
Strand 9	B	525	528	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	998	1003	first strand
Strand 2	B	1006	1015	anti-parallel
Strand 3	B	1023	1030	anti-parallel
Strand 4	B	1033	1040	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UBG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBG