Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UBL entry

There are 7 chains in PDB entry 9UBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 608
B	MET 1	THR 608
C	GLY 218	PRO 607
D	GLY 218	THR 608
E	GLU 221	PRO 605
F	ILE 219	THR 608
J	A 1	A 6

There are148 helices in PDB entry 9UBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	41	54	Right-handed alpha
Helix 3	AA3	A	72	91	Right-handed alpha
Helix 4	AA4	A	93	95	Right-handed 310
Helix 5	AA5	A	107	120	Right-handed alpha
Helix 6	AA6	A	146	153	Right-handed alpha
Helix 7	AA7	A	167	172	Right-handed alpha
Helix 8	AA8	A	199	217	Right-handed alpha
Helix 9	AA9	A	218	220	Right-handed 310
Helix 10	AB1	A	224	230	Right-handed 310
Helix 11	AB2	A	231	239	Right-handed alpha
Helix 12	AB3	A	247	254	Right-handed alpha
Helix 13	AB4	A	270	278	Right-handed alpha
Helix 14	AB5	A	282	286	Right-handed 310
Helix 15	AB6	A	306	313	Right-handed alpha
Helix 16	AB7	A	320	323	Right-handed 310
Helix 17	AB8	A	324	342	Right-handed alpha
Helix 18	AB9	A	352	357	Right-handed 310
Helix 19	AC1	A	362	380	Right-handed alpha
Helix 20	AC2	A	382	386	Right-handed 310
Helix 21	AC3	A	402	420	Right-handed alpha
Helix 22	AC4	A	448	454	Right-handed alpha
Helix 23	AC5	A	467	477	Right-handed alpha
Helix 24	AC6	A	488	491	Right-handed 310
Helix 25	AC7	A	492	503	Right-handed alpha
Helix 26	AC8	A	509	517	Right-handed alpha
Helix 27	AC9	A	532	540	Right-handed alpha
Helix 28	AD1	A	549	554	Right-handed alpha
Helix 29	AD2	A	556	568	Right-handed alpha
Helix 30	AD3	A	572	587	Right-handed alpha
Helix 31	AD4	A	590	602	Right-handed alpha
Helix 32	AD5	B	13	18	Right-handed alpha
Helix 33	AD6	B	39	53	Right-handed alpha
Helix 34	AD7	B	73	91	Right-handed alpha
Helix 35	AD8	B	93	96	Right-handed 310
Helix 36	AD9	B	105	120	Right-handed alpha
Helix 37	AE1	B	145	154	Right-handed alpha
Helix 38	AE2	B	167	172	Right-handed alpha
Helix 39	AE3	B	198	215	Right-handed alpha
Helix 40	AE4	B	216	222	Right-handed 310
Helix 41	AE5	B	224	230	Right-handed 310
Helix 42	AE6	B	231	239	Right-handed alpha
Helix 43	AE7	B	247	254	Right-handed alpha
Helix 44	AE8	B	270	279	Right-handed alpha
Helix 45	AE9	B	282	286	Right-handed 310
Helix 46	AF1	B	305	313	Right-handed alpha
Helix 47	AF2	B	324	342	Right-handed alpha
Helix 48	AF3	B	352	357	Right-handed 310
Helix 49	AF4	B	362	380	Right-handed alpha
Helix 50	AF5	B	405	420	Right-handed alpha
Helix 51	AF6	B	448	454	Right-handed alpha
Helix 52	AF7	B	467	477	Right-handed alpha
Helix 53	AF8	B	492	503	Right-handed alpha
Helix 54	AF9	B	509	517	Right-handed alpha
Helix 55	AG1	B	532	540	Right-handed alpha
Helix 56	AG2	B	556	568	Right-handed alpha
Helix 57	AG3	B	572	587	Right-handed alpha
Helix 58	AG4	B	590	602	Right-handed alpha
Helix 59	AG5	C	218	222	Right-handed 310
Helix 60	AG6	C	231	240	Right-handed alpha
Helix 61	AG7	C	245	253	Right-handed alpha
Helix 62	AG8	C	270	279	Right-handed alpha
Helix 63	AG9	C	306	314	Right-handed alpha
Helix 64	AH1	C	324	343	Right-handed alpha
Helix 65	AH2	C	352	357	Right-handed 310
Helix 66	AH3	C	362	381	Right-handed alpha
Helix 67	AH4	C	396	400	Right-handed 310
Helix 68	AH5	C	402	420	Right-handed alpha
Helix 69	AH6	C	432	435	Right-handed 310
Helix 70	AH7	C	436	446	Right-handed alpha
Helix 71	AH8	C	448	455	Right-handed alpha
Helix 72	AH9	C	467	478	Right-handed alpha
Helix 73	AI1	C	488	491	Right-handed 310
Helix 74	AI2	C	492	503	Right-handed alpha
Helix 75	AI3	C	509	517	Right-handed alpha
Helix 76	AI4	C	532	539	Right-handed alpha
Helix 77	AI5	C	549	554	Right-handed alpha
Helix 78	AI6	C	556	568	Right-handed alpha
Helix 79	AI7	C	572	587	Right-handed alpha
Helix 80	AI8	C	590	602	Right-handed alpha
Helix 81	AI9	D	218	222	Right-handed 310
Helix 82	AJ1	D	224	228	Right-handed 310
Helix 83	AJ2	D	231	240	Right-handed alpha
Helix 84	AJ3	D	247	254	Right-handed alpha
Helix 85	AJ4	D	264	266	Right-handed 310
Helix 86	AJ5	D	270	279	Right-handed alpha
Helix 87	AJ6	D	282	286	Right-handed 310
Helix 88	AJ7	D	306	314	Right-handed alpha
Helix 89	AJ8	D	320	323	Right-handed 310
Helix 90	AJ9	D	324	343	Right-handed alpha
Helix 91	AK1	D	352	357	Right-handed alpha
Helix 92	AK2	D	362	381	Right-handed alpha
Helix 93	AK3	D	403	420	Right-handed alpha
Helix 94	AK4	D	432	435	Right-handed 310
Helix 95	AK5	D	439	446	Right-handed alpha
Helix 96	AK6	D	448	455	Right-handed alpha
Helix 97	AK7	D	467	477	Right-handed alpha
Helix 98	AK8	D	488	491	Right-handed 310
Helix 99	AK9	D	492	503	Right-handed alpha
Helix 100	AL1	D	509	517	Right-handed alpha
Helix 101	AL2	D	532	539	Right-handed alpha
Helix 102	AL3	D	556	568	Right-handed alpha
Helix 103	AL4	D	572	587	Right-handed alpha
Helix 104	AL5	D	590	602	Right-handed alpha
Helix 105	AL6	E	224	230	Right-handed 310
Helix 106	AL7	E	231	239	Right-handed alpha
Helix 107	AL8	E	247	254	Right-handed alpha
Helix 108	AL9	E	264	266	Right-handed 310
Helix 109	AM1	E	270	279	Right-handed alpha
Helix 110	AM2	E	282	286	Right-handed 310
Helix 111	AM3	E	305	314	Right-handed alpha
Helix 112	AM4	E	320	323	Right-handed 310
Helix 113	AM5	E	324	343	Right-handed alpha
Helix 114	AM6	E	352	357	Right-handed 310
Helix 115	AM7	E	362	381	Right-handed alpha
Helix 116	AM8	E	403	420	Right-handed alpha
Helix 117	AM9	E	432	435	Right-handed 310
Helix 118	AN1	E	436	446	Right-handed alpha
Helix 119	AN2	E	448	454	Right-handed alpha
Helix 120	AN3	E	467	477	Right-handed alpha
Helix 121	AN4	E	492	503	Right-handed alpha
Helix 122	AN5	E	509	517	Right-handed alpha
Helix 123	AN6	E	532	540	Right-handed alpha
Helix 124	AN7	E	556	568	Right-handed alpha
Helix 125	AN8	E	572	587	Right-handed alpha
Helix 126	AN9	E	590	602	Right-handed alpha
Helix 127	AO1	F	225	230	Right-handed 310
Helix 128	AO2	F	231	239	Right-handed alpha
Helix 129	AO3	F	246	253	Right-handed alpha
Helix 130	AO4	F	269	279	Right-handed alpha
Helix 131	AO5	F	282	286	Right-handed 310
Helix 132	AO6	F	306	315	Right-handed alpha
Helix 133	AO7	F	320	323	Right-handed 310
Helix 134	AO8	F	324	342	Right-handed alpha
Helix 135	AO9	F	352	357	Right-handed 310
Helix 136	AP1	F	362	381	Right-handed alpha
Helix 137	AP2	F	396	400	Right-handed 310
Helix 138	AP3	F	404	420	Right-handed alpha
Helix 139	AP4	F	433	436	Right-handed 310
Helix 140	AP5	F	437	445	Right-handed alpha
Helix 141	AP6	F	448	455	Right-handed alpha
Helix 142	AP7	F	467	477	Right-handed alpha
Helix 143	AP8	F	492	503	Right-handed alpha
Helix 144	AP9	F	509	517	Right-handed alpha
Helix 145	AQ1	F	532	540	Right-handed alpha
Helix 146	AQ2	F	556	568	Right-handed alpha
Helix 147	AQ3	F	572	587	Right-handed alpha
Helix 148	AQ4	F	590	602	Right-handed alpha

There are 9 sheets in PDB entry 9UBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	97	99	parallel
Strand 3	A	123	124	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	61	63	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	344	351	parallel
Strand 3	A	388	394	parallel
Strand 4	A	426	432	parallel
Strand 5	A	457	461	parallel
Strand 6	A	482	484	parallel
Strand 7	A	505	508	parallel
Strand 8	A	542	545	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	3	6	parallel
Strand 3	B	98	100	parallel
Strand 4	B	123	125	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	396	parallel
Strand 4	B	426	432	parallel
Strand 5	B	457	462	parallel
Strand 6	B	482	485	parallel
Strand 7	B	505	508	parallel
Strand 8	B	543	545	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	344	351	parallel
Strand 3	C	388	394	parallel
Strand 4	C	426	431	parallel
Strand 5	C	457	460	parallel
Strand 6	C	482	484	parallel
Strand 7	C	505	508	parallel
Strand 8	C	542	545	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	262	first strand
Strand 2	D	344	351	parallel
Strand 3	D	388	394	parallel
Strand 4	D	426	431	parallel
Strand 5	D	457	462	parallel
Strand 6	D	482	485	parallel
Strand 7	D	505	508	parallel
Strand 8	D	542	545	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	262	first strand
Strand 2	E	344	351	parallel
Strand 3	E	388	394	parallel
Strand 4	E	426	431	parallel
Strand 5	E	457	461	parallel
Strand 6	E	482	484	parallel
Strand 7	E	505	508	parallel
Strand 8	E	542	545	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	344	351	parallel
Strand 3	F	388	395	parallel
Strand 4	F	426	431	parallel
Strand 5	F	457	462	parallel
Strand 6	F	482	485	parallel
Strand 7	F	505	508	parallel
Strand 8	F	542	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBL