Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UBM entry

There are 8 chains in PDB entry 9UBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 220	PRO 607
F	GLU 217	THR 610
X	A 1	A 6
Y	A 1	A 6
A	MET 1	THR 610
B	MET 1	THR 610
C	MET 1	THR 608
D	MET 1	GLU 611

There are168 helices in PDB entry 9UBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	224	229	Right-handed alpha
Helix 2	AA2	E	231	239	Right-handed alpha
Helix 3	AA3	E	247	254	Right-handed alpha
Helix 4	AA4	E	270	279	Right-handed alpha
Helix 5	AA5	E	282	286	Right-handed 310
Helix 6	AA6	E	306	313	Right-handed alpha
Helix 7	AA7	E	320	323	Right-handed 310
Helix 8	AA8	E	324	342	Right-handed alpha
Helix 9	AA9	E	352	357	Right-handed 310
Helix 10	AB1	E	362	380	Right-handed alpha
Helix 11	AB2	E	381	386	Right-handed 310
Helix 12	AB3	E	403	420	Right-handed alpha
Helix 13	AB4	E	432	435	Right-handed 310
Helix 14	AB5	E	436	446	Right-handed alpha
Helix 15	AB6	E	448	455	Right-handed alpha
Helix 16	AB7	E	467	477	Right-handed alpha
Helix 17	AB8	E	488	491	Right-handed 310
Helix 18	AB9	E	492	503	Right-handed alpha
Helix 19	AC1	E	509	517	Right-handed alpha
Helix 20	AC2	E	532	540	Right-handed alpha
Helix 21	AC3	E	549	554	Right-handed alpha
Helix 22	AC4	E	556	568	Right-handed alpha
Helix 23	AC5	E	572	587	Right-handed alpha
Helix 24	AC6	E	590	602	Right-handed alpha
Helix 25	AC7	F	224	230	Right-handed 310
Helix 26	AC8	F	231	240	Right-handed alpha
Helix 27	AC9	F	247	254	Right-handed alpha
Helix 28	AD1	F	264	266	Right-handed 310
Helix 29	AD2	F	269	279	Right-handed alpha
Helix 30	AD3	F	282	286	Right-handed 310
Helix 31	AD4	F	305	313	Right-handed alpha
Helix 32	AD5	F	320	323	Right-handed 310
Helix 33	AD6	F	324	342	Right-handed alpha
Helix 34	AD7	F	352	357	Right-handed 310
Helix 35	AD8	F	362	381	Right-handed alpha
Helix 36	AD9	F	382	386	Right-handed 310
Helix 37	AE1	F	403	420	Right-handed alpha
Helix 38	AE2	F	433	435	Right-handed 310
Helix 39	AE3	F	436	446	Right-handed alpha
Helix 40	AE4	F	448	454	Right-handed alpha
Helix 41	AE5	F	467	477	Right-handed alpha
Helix 42	AE6	F	492	503	Right-handed alpha
Helix 43	AE7	F	509	517	Right-handed alpha
Helix 44	AE8	F	532	539	Right-handed alpha
Helix 45	AE9	F	549	554	Right-handed alpha
Helix 46	AF1	F	556	568	Right-handed alpha
Helix 47	AF2	F	572	587	Right-handed alpha
Helix 48	AF3	F	590	602	Right-handed alpha
Helix 49	AF4	A	14	23	Right-handed alpha
Helix 50	AF5	A	37	39	Right-handed 310
Helix 51	AF6	A	40	53	Right-handed alpha
Helix 52	AF7	A	73	91	Right-handed alpha
Helix 53	AF8	A	110	120	Right-handed alpha
Helix 54	AF9	A	144	153	Right-handed alpha
Helix 55	AG1	A	167	172	Right-handed alpha
Helix 56	AG2	A	197	215	Right-handed alpha
Helix 57	AG3	A	218	222	Right-handed 310
Helix 58	AG4	A	224	230	Right-handed 310
Helix 59	AG5	A	231	239	Right-handed alpha
Helix 60	AG6	A	247	254	Right-handed alpha
Helix 61	AG7	A	264	266	Right-handed 310
Helix 62	AG8	A	270	279	Right-handed alpha
Helix 63	AG9	A	282	286	Right-handed 310
Helix 64	AH1	A	306	313	Right-handed alpha
Helix 65	AH2	A	320	323	Right-handed 310
Helix 66	AH3	A	324	342	Right-handed alpha
Helix 67	AH4	A	352	357	Right-handed 310
Helix 68	AH5	A	362	381	Right-handed alpha
Helix 69	AH6	A	403	420	Right-handed alpha
Helix 70	AH7	A	440	443	Right-handed 310
Helix 71	AH8	A	444	454	Right-handed alpha
Helix 72	AH9	A	467	477	Right-handed alpha
Helix 73	AI1	A	492	503	Right-handed alpha
Helix 74	AI2	A	509	517	Right-handed alpha
Helix 75	AI3	A	533	539	Right-handed alpha
Helix 76	AI4	A	556	568	Right-handed alpha
Helix 77	AI5	A	572	587	Right-handed alpha
Helix 78	AI6	A	590	602	Right-handed alpha
Helix 79	AI7	B	18	22	Right-handed 310
Helix 80	AI8	B	39	53	Right-handed alpha
Helix 81	AI9	B	72	91	Right-handed alpha
Helix 82	AJ1	B	93	95	Right-handed 310
Helix 83	AJ2	B	108	120	Right-handed alpha
Helix 84	AJ3	B	144	152	Right-handed alpha
Helix 85	AJ4	B	167	172	Right-handed alpha
Helix 86	AJ5	B	198	216	Right-handed alpha
Helix 87	AJ6	B	217	219	Right-handed 310
Helix 88	AJ7	B	224	230	Right-handed 310
Helix 89	AJ8	B	231	240	Right-handed alpha
Helix 90	AJ9	B	247	254	Right-handed alpha
Helix 91	AK1	B	264	266	Right-handed 310
Helix 92	AK2	B	270	279	Right-handed alpha
Helix 93	AK3	B	282	286	Right-handed 310
Helix 94	AK4	B	306	313	Right-handed alpha
Helix 95	AK5	B	326	327	Right-handed 310
Helix 96	AK6	B	329	329	Right-handed 310
Helix 97	AK7	B	330	342	Right-handed alpha
Helix 98	AK8	B	352	357	Right-handed 310
Helix 99	AK9	B	362	380	Right-handed alpha
Helix 100	AL1	B	404	420	Right-handed alpha
Helix 101	AL2	B	438	446	Right-handed alpha
Helix 102	AL3	B	448	454	Right-handed alpha
Helix 103	AL4	B	467	477	Right-handed alpha
Helix 104	AL5	B	492	503	Right-handed alpha
Helix 105	AL6	B	509	517	Right-handed alpha
Helix 106	AL7	B	533	538	Right-handed alpha
Helix 107	AL8	B	549	554	Right-handed alpha
Helix 108	AL9	B	556	568	Right-handed alpha
Helix 109	AM1	B	572	587	Right-handed alpha
Helix 110	AM2	B	590	602	Right-handed alpha
Helix 111	AM3	C	14	20	Right-handed alpha
Helix 112	AM4	C	39	53	Right-handed alpha
Helix 113	AM5	C	73	91	Right-handed alpha
Helix 114	AM6	C	93	95	Right-handed 310
Helix 115	AM7	C	105	120	Right-handed alpha
Helix 116	AM8	C	144	152	Right-handed alpha
Helix 117	AM9	C	167	172	Right-handed alpha
Helix 118	AN1	C	196	215	Right-handed alpha
Helix 119	AN2	C	224	230	Right-handed 310
Helix 120	AN3	C	231	240	Right-handed alpha
Helix 121	AN4	C	247	254	Right-handed alpha
Helix 122	AN5	C	264	266	Right-handed 310
Helix 123	AN6	C	269	278	Right-handed alpha
Helix 124	AN7	C	282	286	Right-handed 310
Helix 125	AN8	C	306	313	Right-handed alpha
Helix 126	AN9	C	324	342	Right-handed alpha
Helix 127	AO1	C	352	357	Right-handed 310
Helix 128	AO2	C	362	381	Right-handed alpha
Helix 129	AO3	C	382	386	Right-handed 310
Helix 130	AO4	C	403	420	Right-handed alpha
Helix 131	AO5	C	448	454	Right-handed alpha
Helix 132	AO6	C	467	477	Right-handed alpha
Helix 133	AO7	C	488	491	Right-handed 310
Helix 134	AO8	C	492	503	Right-handed alpha
Helix 135	AO9	C	509	517	Right-handed alpha
Helix 136	AP1	C	532	539	Right-handed alpha
Helix 137	AP2	C	549	554	Right-handed alpha
Helix 138	AP3	C	556	568	Right-handed alpha
Helix 139	AP4	C	572	587	Right-handed alpha
Helix 140	AP5	C	590	602	Right-handed alpha
Helix 141	AP6	D	14	23	Right-handed alpha
Helix 142	AP7	D	37	39	Right-handed 310
Helix 143	AP8	D	40	54	Right-handed alpha
Helix 144	AP9	D	73	91	Right-handed alpha
Helix 145	AQ1	D	107	120	Right-handed alpha
Helix 146	AQ2	D	144	153	Right-handed alpha
Helix 147	AQ3	D	167	173	Right-handed alpha
Helix 148	AQ4	D	198	216	Right-handed alpha
Helix 149	AQ5	D	218	222	Right-handed 310
Helix 150	AQ6	D	224	230	Right-handed 310
Helix 151	AQ7	D	231	239	Right-handed alpha
Helix 152	AQ8	D	247	254	Right-handed alpha
Helix 153	AQ9	D	264	266	Right-handed 310
Helix 154	AR1	D	270	279	Right-handed alpha
Helix 155	AR2	D	282	286	Right-handed 310
Helix 156	AR3	D	306	313	Right-handed alpha
Helix 157	AR4	D	324	342	Right-handed alpha
Helix 158	AR5	D	352	357	Right-handed 310
Helix 159	AR6	D	362	380	Right-handed alpha
Helix 160	AR7	D	403	420	Right-handed alpha
Helix 161	AR8	D	441	445	Right-handed 310
Helix 162	AR9	D	448	455	Right-handed alpha
Helix 163	AS1	D	467	477	Right-handed alpha
Helix 164	AS2	D	492	503	Right-handed alpha
Helix 165	AS3	D	509	517	Right-handed alpha
Helix 166	AS4	D	556	568	Right-handed alpha
Helix 167	AS5	D	572	587	Right-handed alpha
Helix 168	AS6	D	590	602	Right-handed alpha

There are 11 sheets in PDB entry 9UBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	257	first strand
Strand 2	E	344	351	parallel
Strand 3	E	261	262	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	257	first strand
Strand 2	E	344	351	parallel
Strand 3	E	388	394	parallel
Strand 4	E	426	431	parallel
Strand 5	E	457	460	parallel
Strand 6	E	482	484	parallel
Strand 7	E	505	508	parallel
Strand 8	E	543	545	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	344	351	parallel
Strand 3	F	388	395	parallel
Strand 4	F	426	431	parallel
Strand 5	F	457	461	parallel
Strand 6	F	482	484	parallel
Strand 7	F	505	508	parallel
Strand 8	F	542	545	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	29	34	parallel
Strand 3	A	3	8	parallel
Strand 4	A	97	100	parallel
Strand 5	A	121	125	parallel
Strand 6	A	160	164	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	344	351	parallel
Strand 3	A	388	396	parallel
Strand 4	A	426	432	parallel
Strand 5	A	457	460	parallel
Strand 6	A	482	484	parallel
Strand 7	A	505	508	parallel
Strand 8	A	542	545	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	29	34	parallel
Strand 3	B	3	6	parallel
Strand 4	B	97	100	parallel
Strand 5	B	123	125	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	395	parallel
Strand 4	B	426	431	parallel
Strand 5	B	457	460	parallel
Strand 6	B	482	484	parallel
Strand 7	B	505	508	parallel
Strand 8	B	542	545	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	97	100	parallel
Strand 3	C	3	6	parallel
Strand 4	C	29	34	parallel
Strand 5	C	58	64	parallel
Strand 6	C	188	192	parallel
Strand 7	C	181	185	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	344	351	parallel
Strand 3	C	388	395	parallel
Strand 4	C	426	431	parallel
Strand 5	C	457	460	parallel
Strand 6	C	482	484	parallel
Strand 7	C	505	508	parallel
Strand 8	C	543	545	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	29	34	parallel
Strand 3	D	3	8	parallel
Strand 4	D	97	100	parallel
Strand 5	D	121	125	parallel
Strand 6	D	160	164	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	262	first strand
Strand 2	D	344	351	parallel
Strand 3	D	388	397	parallel
Strand 4	D	426	433	parallel
Strand 5	D	457	461	parallel
Strand 6	D	482	484	parallel
Strand 7	D	505	508	parallel
Strand 8	D	542	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBM