Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UBO entry

There are 9 chains in PDB entry 9UBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 610
D	MET 1	THR 610
X	A 1	A 6
Y	A 1	A 6
Z	A 1	A 6
B	MET 1	THR 610
C	MET 1	THR 608
E	MET 1	THR 610
F	MET 1	THR 610

There are175 helices in PDB entry 9UBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	39	54	Right-handed alpha
Helix 3	AA3	A	72	91	Right-handed alpha
Helix 4	AA4	A	105	120	Right-handed alpha
Helix 5	AA5	A	143	153	Right-handed alpha
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	196	215	Right-handed alpha
Helix 8	AA8	A	224	230	Right-handed 310
Helix 9	AA9	A	231	240	Right-handed alpha
Helix 10	AB1	A	246	253	Right-handed alpha
Helix 11	AB2	A	264	266	Right-handed 310
Helix 12	AB3	A	270	279	Right-handed alpha
Helix 13	AB4	A	282	286	Right-handed 310
Helix 14	AB5	A	306	312	Right-handed alpha
Helix 15	AB6	A	320	323	Right-handed 310
Helix 16	AB7	A	324	342	Right-handed alpha
Helix 17	AB8	A	352	357	Right-handed alpha
Helix 18	AB9	A	362	381	Right-handed alpha
Helix 19	AC1	A	382	386	Right-handed 310
Helix 20	AC2	A	405	420	Right-handed alpha
Helix 21	AC3	A	436	440	Right-handed 310
Helix 22	AC4	A	444	455	Right-handed alpha
Helix 23	AC5	A	467	477	Right-handed alpha
Helix 24	AC6	A	488	491	Right-handed 310
Helix 25	AC7	A	492	503	Right-handed alpha
Helix 26	AC8	A	509	517	Right-handed alpha
Helix 27	AC9	A	533	540	Right-handed alpha
Helix 28	AD1	A	556	568	Right-handed alpha
Helix 29	AD2	A	572	587	Right-handed alpha
Helix 30	AD3	A	590	602	Right-handed alpha
Helix 31	AD4	D	13	19	Right-handed alpha
Helix 32	AD5	D	39	54	Right-handed alpha
Helix 33	AD6	D	73	91	Right-handed alpha
Helix 34	AD7	D	93	96	Right-handed 310
Helix 35	AD8	D	105	120	Right-handed alpha
Helix 36	AD9	D	143	154	Right-handed alpha
Helix 37	AE1	D	167	172	Right-handed alpha
Helix 38	AE2	D	196	215	Right-handed alpha
Helix 39	AE3	D	224	230	Right-handed 310
Helix 40	AE4	D	231	240	Right-handed alpha
Helix 41	AE5	D	247	254	Right-handed alpha
Helix 42	AE6	D	264	266	Right-handed 310
Helix 43	AE7	D	270	279	Right-handed alpha
Helix 44	AE8	D	282	286	Right-handed 310
Helix 45	AE9	D	306	313	Right-handed alpha
Helix 46	AF1	D	324	342	Right-handed alpha
Helix 47	AF2	D	362	381	Right-handed alpha
Helix 48	AF3	D	404	420	Right-handed alpha
Helix 49	AF4	D	440	445	Right-handed 310
Helix 50	AF5	D	448	454	Right-handed alpha
Helix 51	AF6	D	468	477	Right-handed alpha
Helix 52	AF7	D	488	491	Right-handed 310
Helix 53	AF8	D	492	503	Right-handed alpha
Helix 54	AF9	D	509	517	Right-handed alpha
Helix 55	AG1	D	532	540	Right-handed alpha
Helix 56	AG2	D	556	568	Right-handed alpha
Helix 57	AG3	D	572	587	Right-handed alpha
Helix 58	AG4	D	590	602	Right-handed alpha
Helix 59	AG5	B	13	20	Right-handed alpha
Helix 60	AG6	B	40	54	Right-handed alpha
Helix 61	AG7	B	72	91	Right-handed alpha
Helix 62	AG8	B	106	120	Right-handed alpha
Helix 63	AG9	B	143	154	Right-handed alpha
Helix 64	AH1	B	167	172	Right-handed alpha
Helix 65	AH2	B	196	215	Right-handed alpha
Helix 66	AH3	B	224	230	Right-handed 310
Helix 67	AH4	B	231	239	Right-handed alpha
Helix 68	AH5	B	247	254	Right-handed alpha
Helix 69	AH6	B	264	266	Right-handed 310
Helix 70	AH7	B	269	279	Right-handed alpha
Helix 71	AH8	B	282	286	Right-handed 310
Helix 72	AH9	B	306	313	Right-handed alpha
Helix 73	AI1	B	324	342	Right-handed alpha
Helix 74	AI2	B	352	357	Right-handed 310
Helix 75	AI3	B	362	380	Right-handed alpha
Helix 76	AI4	B	403	418	Right-handed alpha
Helix 77	AI5	B	441	443	Right-handed 310
Helix 78	AI6	B	444	455	Right-handed alpha
Helix 79	AI7	B	467	477	Right-handed alpha
Helix 80	AI8	B	492	503	Right-handed alpha
Helix 81	AI9	B	509	517	Right-handed alpha
Helix 82	AJ1	B	532	540	Right-handed alpha
Helix 83	AJ2	B	556	568	Right-handed alpha
Helix 84	AJ3	B	572	587	Right-handed alpha
Helix 85	AJ4	B	590	602	Right-handed alpha
Helix 86	AJ5	C	13	20	Right-handed alpha
Helix 87	AJ6	C	37	39	Right-handed 310
Helix 88	AJ7	C	40	54	Right-handed alpha
Helix 89	AJ8	C	72	91	Right-handed alpha
Helix 90	AJ9	C	93	95	Right-handed 310
Helix 91	AK1	C	106	120	Right-handed alpha
Helix 92	AK2	C	143	153	Right-handed alpha
Helix 93	AK3	C	167	172	Right-handed alpha
Helix 94	AK4	C	197	215	Right-handed alpha
Helix 95	AK5	C	224	230	Right-handed 310
Helix 96	AK6	C	231	240	Right-handed alpha
Helix 97	AK7	C	247	254	Right-handed alpha
Helix 98	AK8	C	264	266	Right-handed 310
Helix 99	AK9	C	270	279	Right-handed alpha
Helix 100	AL1	C	282	286	Right-handed 310
Helix 101	AL2	C	306	313	Right-handed alpha
Helix 102	AL3	C	324	342	Right-handed alpha
Helix 103	AL4	C	352	357	Right-handed 310
Helix 104	AL5	C	362	381	Right-handed alpha
Helix 105	AL6	C	382	386	Right-handed 310
Helix 106	AL7	C	403	420	Right-handed alpha
Helix 107	AL8	C	436	443	Right-handed 310
Helix 108	AL9	C	444	455	Right-handed alpha
Helix 109	AM1	C	468	477	Right-handed alpha
Helix 110	AM2	C	487	491	Right-handed 310
Helix 111	AM3	C	492	503	Right-handed alpha
Helix 112	AM4	C	509	517	Right-handed alpha
Helix 113	AM5	C	532	539	Right-handed alpha
Helix 114	AM6	C	556	568	Right-handed alpha
Helix 115	AM7	C	572	587	Right-handed alpha
Helix 116	AM8	C	590	602	Right-handed alpha
Helix 117	AM9	E	14	19	Right-handed alpha
Helix 118	AN1	E	20	22	Right-handed 310
Helix 119	AN2	E	40	54	Right-handed alpha
Helix 120	AN3	E	73	91	Right-handed alpha
Helix 121	AN4	E	93	95	Right-handed 310
Helix 122	AN5	E	107	120	Right-handed alpha
Helix 123	AN6	E	144	145	Right-handed 310
Helix 124	AN7	E	147	147	Right-handed 310
Helix 125	AN8	E	148	154	Right-handed alpha
Helix 126	AN9	E	167	172	Right-handed alpha
Helix 127	AO1	E	196	215	Right-handed alpha
Helix 128	AO2	E	216	221	Right-handed 310
Helix 129	AO3	E	224	230	Right-handed 310
Helix 130	AO4	E	231	240	Right-handed alpha
Helix 131	AO5	E	247	253	Right-handed alpha
Helix 132	AO6	E	269	279	Right-handed alpha
Helix 133	AO7	E	282	286	Right-handed 310
Helix 134	AO8	E	306	313	Right-handed alpha
Helix 135	AO9	E	324	342	Right-handed alpha
Helix 136	AP1	E	362	381	Right-handed alpha
Helix 137	AP2	E	403	420	Right-handed alpha
Helix 138	AP3	E	444	455	Right-handed alpha
Helix 139	AP4	E	467	477	Right-handed alpha
Helix 140	AP5	E	488	491	Right-handed 310
Helix 141	AP6	E	492	503	Right-handed alpha
Helix 142	AP7	E	509	517	Right-handed alpha
Helix 143	AP8	E	532	540	Right-handed alpha
Helix 144	AP9	E	556	568	Right-handed alpha
Helix 145	AQ1	E	572	587	Right-handed alpha
Helix 146	AQ2	E	590	602	Right-handed alpha
Helix 147	AQ3	F	39	53	Right-handed alpha
Helix 148	AQ4	F	73	91	Right-handed alpha
Helix 149	AQ5	F	93	95	Right-handed 310
Helix 150	AQ6	F	107	120	Right-handed alpha
Helix 151	AQ7	F	143	154	Right-handed alpha
Helix 152	AQ8	F	167	172	Right-handed alpha
Helix 153	AQ9	F	199	215	Right-handed alpha
Helix 154	AR1	F	216	220	Right-handed 310
Helix 155	AR2	F	224	230	Right-handed 310
Helix 156	AR3	F	231	239	Right-handed alpha
Helix 157	AR4	F	247	254	Right-handed alpha
Helix 158	AR5	F	264	266	Right-handed 310
Helix 159	AR6	F	269	279	Right-handed alpha
Helix 160	AR7	F	282	286	Right-handed 310
Helix 161	AR8	F	305	313	Right-handed alpha
Helix 162	AR9	F	320	323	Right-handed 310
Helix 163	AS1	F	324	342	Right-handed alpha
Helix 164	AS2	F	362	381	Right-handed alpha
Helix 165	AS3	F	403	420	Right-handed alpha
Helix 166	AS4	F	440	443	Right-handed 310
Helix 167	AS5	F	444	455	Right-handed alpha
Helix 168	AS6	F	468	476	Right-handed alpha
Helix 169	AS7	F	488	491	Right-handed 310
Helix 170	AS8	F	492	503	Right-handed alpha
Helix 171	AS9	F	509	517	Right-handed alpha
Helix 172	AT1	F	532	539	Right-handed alpha
Helix 173	AT2	F	556	568	Right-handed alpha
Helix 174	AT3	F	572	587	Right-handed alpha
Helix 175	AT4	F	590	602	Right-handed alpha

There are 14 sheets in PDB entry 9UBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	123	129	anti-parallel
Strand 3	A	98	100	parallel
Strand 4	A	4	7	parallel
Strand 5	A	29	35	parallel
Strand 6	A	58	64	parallel
Strand 7	A	188	192	parallel
Strand 8	A	181	185	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	344	351	parallel
Strand 3	A	388	397	parallel
Strand 4	A	426	433	parallel
Strand 5	A	457	460	parallel
Strand 6	A	482	484	parallel
Strand 7	A	505	508	parallel
Strand 8	A	543	545	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	29	34	parallel
Strand 3	D	3	8	parallel
Strand 4	D	98	100	parallel
Strand 5	D	121	129	parallel
Strand 6	D	156	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	185	first strand
Strand 2	D	188	192	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	262	first strand
Strand 2	D	344	351	parallel
Strand 3	D	388	397	parallel
Strand 4	D	426	433	parallel
Strand 5	D	457	462	parallel
Strand 6	D	482	485	parallel
Strand 7	D	505	508	parallel
Strand 8	D	543	545	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	97	100	parallel
Strand 3	B	124	126	parallel
Strand 4	B	159	160	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	61	64	parallel
Strand 3	B	189	192	parallel
Strand 4	B	181	184	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	397	parallel
Strand 4	B	426	433	parallel
Strand 5	B	457	460	parallel
Strand 6	B	482	484	parallel
Strand 7	B	505	508	parallel
Strand 8	B	543	545	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	164	first strand
Strand 2	C	121	129	anti-parallel
Strand 3	C	97	100	parallel
Strand 4	C	3	6	parallel
Strand 5	C	31	34	parallel
Strand 6	C	62	64	parallel
Strand 7	C	188	191	parallel
Strand 8	C	184	185	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	344	351	parallel
Strand 3	C	388	397	parallel
Strand 4	C	426	433	parallel
Strand 5	C	457	462	parallel
Strand 6	C	482	485	parallel
Strand 7	C	505	508	parallel
Strand 8	C	543	545	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	63	first strand
Strand 2	E	29	34	parallel
Strand 3	E	3	6	parallel
Strand 4	E	97	99	parallel
Strand 5	E	123	124	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	262	first strand
Strand 2	E	344	351	parallel
Strand 3	E	388	397	parallel
Strand 4	E	426	433	parallel
Strand 5	E	457	461	parallel
Strand 6	E	482	484	parallel
Strand 7	E	505	508	parallel
Strand 8	E	543	545	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	63	first strand
Strand 2	F	29	34	parallel
Strand 3	F	3	6	parallel
Strand 4	F	97	99	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	344	351	parallel
Strand 3	F	388	397	parallel
Strand 4	F	426	433	parallel
Strand 5	F	457	461	parallel
Strand 6	F	482	484	parallel
Strand 7	F	505	508	parallel
Strand 8	F	543	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBO