Analysis of interatomic Contacts of Structural Units in PDB entry:
9UBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UBR entry

There are 18 chains in PDB entry 9UBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 8THR 266
B
GLN 8THR 266
C
GLN 8THR 266
D
GLN 8THR 266
E
GLN 8GLU 267
F
GLN 8THR 266
G
GLU 3SER 120
H
GLU 3SER 120
I
GLU 3SER 120
J
GLU 3SER 120
K
GLU 3SER 120
L
GLU 3SER 120
M
SER 2LYS 141
N
SER 2LYS 141
O
SER 2LYS 141
P
SER 2LYS 141
Q
SER 2LYS 141
R
SER 2LYS 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 9UBR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
39 73Right-handed alpha
Helix 4
AA4
A
82 96Right-handed alpha
Helix 5
AA5
A
109 117Right-handed alpha
Helix 6
AA6
A
117 123Right-handed alpha
Helix 7
AA7
A
134 143Right-handed alpha
Helix 8
AA8
A
155 166Right-handed alpha
Helix 9
AA9
A
175 185Right-handed alpha
Helix 10
AB1
A
194 206Right-handed alpha
Helix 11
AB2
A
224 232Right-handed alpha
Helix 12
AB3
A
247 263Right-handed alpha
Helix 13
AB4
B
9 17Right-handed alpha
Helix 14
AB5
B
22 36Right-handed alpha
Helix 15
AB6
B
39 73Right-handed alpha
Helix 16
AB7
B
82 95Right-handed alpha
Helix 17
AB8
B
109 117Right-handed alpha
Helix 18
AB9
B
117 122Right-handed alpha
Helix 19
AC1
B
134 144Right-handed alpha
Helix 20
AC2
B
155 165Right-handed alpha
Helix 21
AC3
B
175 184Right-handed alpha
Helix 22
AC4
B
194 199Right-handed alpha
Helix 23
AC5
B
199 208Right-handed alpha
Helix 24
AC6
B
222 232Right-handed alpha
Helix 25
AC7
B
247 265Right-handed alpha
Helix 26
AC8
C
9 17Right-handed alpha
Helix 27
AC9
C
22 36Right-handed alpha
Helix 28
AD1
C
39 73Right-handed alpha
Helix 29
AD2
C
82 96Right-handed alpha
Helix 30
AD3
C
109 117Right-handed alpha
Helix 31
AD4
C
117 122Right-handed alpha
Helix 32
AD5
C
134 144Right-handed alpha
Helix 33
AD6
C
155 166Right-handed alpha
Helix 34
AD7
C
175 184Right-handed alpha
Helix 35
AD8
C
194 199Right-handed alpha
Helix 36
AD9
C
199 207Right-handed alpha
Helix 37
AE1
C
222 231Right-handed alpha
Helix 38
AE2
C
247 265Right-handed alpha
Helix 39
AE3
D
9 18Right-handed alpha
Helix 40
AE4
D
22 36Right-handed alpha
Helix 41
AE5
D
39 73Right-handed alpha
Helix 42
AE6
D
82 95Right-handed alpha
Helix 43
AE7
D
109 117Right-handed alpha
Helix 44
AE8
D
117 123Right-handed alpha
Helix 45
AE9
D
134 143Right-handed alpha
Helix 46
AF1
D
155 166Right-handed alpha
Helix 47
AF2
D
175 185Right-handed alpha
Helix 48
AF3
D
194 208Right-handed alpha
Helix 49
AF4
D
225 232Right-handed alpha
Helix 50
AF5
D
247 264Right-handed alpha
Helix 51
AF6
E
9 17Right-handed alpha
Helix 52
AF7
E
22 36Right-handed alpha
Helix 53
AF8
E
39 73Right-handed alpha
Helix 54
AF9
E
82 96Right-handed alpha
Helix 55
AG1
E
109 116Right-handed alpha
Helix 56
AG2
E
117 122Right-handed alpha
Helix 57
AG3
E
134 143Right-handed alpha
Helix 58
AG4
E
155 166Right-handed alpha
Helix 59
AG5
E
175 184Right-handed alpha
Helix 60
AG6
E
194 206Right-handed alpha
Helix 61
AG7
E
222 232Right-handed alpha
Helix 62
AG8
E
247 263Right-handed alpha
Helix 63
AG9
F
9 17Right-handed alpha
Helix 64
AH1
F
22 36Right-handed alpha
Helix 65
AH2
F
39 73Right-handed alpha
Helix 66
AH3
F
82 96Right-handed alpha
Helix 67
AH4
F
109 117Right-handed alpha
Helix 68
AH5
F
117 122Right-handed alpha
Helix 69
AH6
F
134 144Right-handed alpha
Helix 70
AH7
F
155 166Right-handed alpha
Helix 71
AH8
F
175 185Right-handed alpha
Helix 72
AH9
F
194 207Right-handed alpha
Helix 73
AI1
F
222 233Right-handed alpha
Helix 74
AI2
F
247 265Right-handed alpha
Helix 75
AI3
G
85 89Right-handed 310
Helix 76
AI4
G
103 107Right-handed 310
Helix 77
AI5
H
85 89Right-handed 310
Helix 78
AI6
H
103 107Right-handed 310
Helix 79
AI7
I
85 89Right-handed 310
Helix 80
AI8
J
85 89Right-handed 310
Helix 81
AI9
J
103 107Right-handed 310
Helix 82
AJ1
K
85 89Right-handed 310
Helix 83
AJ2
K
103 107Right-handed 310
Helix 84
AJ3
L
85 89Right-handed 310
Helix 85
AJ4
L
103 107Right-handed 310
Helix 86
AJ5
M
29 33Right-handed 310
Helix 87
AJ6
N
29 33Right-handed 310
Helix 88
AJ7
N
117 121Right-handed 310
Helix 89
AJ8
O
29 33Right-handed 310
Helix 90
AJ9
O
117 121Right-handed 310
Helix 91
AK1
P
29 33Right-handed 310
Helix 92
AK2
P
117 121Right-handed 310
Helix 93
AK3
Q
29 33Right-handed 310
Helix 94
AK4
Q
117 121Right-handed 310
Helix 95
AK5
R
29 33Right-handed 310
Helix 96
AK6
R
117 121Right-handed 310
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There are 49 sheets in PDB entry 9UBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 130first strand
Strand 2
A
100 104parallel
Strand 3
A
74 78parallel
Strand 4
A
237 239parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
148 150first strand
Strand 2
A
168 170parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 173first strand
Strand 2
A
189 192parallel
Strand 3
A
214 217parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
168 170first strand
Strand 2
B
148 150parallel
Strand 3
B
126 130parallel
Strand 4
B
100 104parallel
Strand 5
B
74 78parallel
Strand 6
B
237 239parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
172 173first strand
Strand 2
B
189 192parallel
Strand 3
B
214 215parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 130first strand
Strand 2
C
100 104parallel
Strand 3
C
74 78parallel
Strand 4
C
237 239parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
148 150first strand
Strand 2
C
168 170parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 173first strand
Strand 2
C
189 192parallel
Strand 3
C
214 217parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
126 130first strand
Strand 2
D
100 104parallel
Strand 3
D
75 78parallel
Strand 4
D
238 239parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
148 150first strand
Strand 2
D
168 170parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
172 173first strand
Strand 2
D
189 192parallel
Strand 3
D
214 215parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
126 130first strand
Strand 2
E
100 104parallel
Strand 3
E
74 78parallel
Strand 4
E
237 239parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
148 150first strand
Strand 2
E
168 170parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
172 173first strand
Strand 2
E
189 192parallel
Strand 3
E
214 215parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
126 130first strand
Strand 2
F
100 104parallel
Strand 3
F
74 78parallel
Strand 4
F
237 239parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
148 150first strand
Strand 2
F
168 170parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
172 173first strand
Strand 2
F
189 192parallel
Strand 3
F
214 217parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
6 9first strand
Strand 2
G
20 26anti-parallel
Strand 3
G
76 81anti-parallel
Strand 4
G
66 71anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
56 58first strand
Strand 2
G
45 51anti-parallel
Strand 3
G
32 38anti-parallel
Strand 4
G
90 97anti-parallel
Strand 5
G
114 116anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6 9first strand
Strand 2
H
23 26anti-parallel
Strand 3
H
76 81anti-parallel
Strand 4
H
20 21anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6 9first strand
Strand 2
H
23 26anti-parallel
Strand 3
H
76 81anti-parallel
Strand 4
H
66 71anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
56 58first strand
Strand 2
H
44 51anti-parallel
Strand 3
H
32 38anti-parallel
Strand 4
H
90 97anti-parallel
Strand 5
H
114 116anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
6 9first strand
Strand 2
I
23 26anti-parallel
Strand 3
I
76 81anti-parallel
Strand 4
I
20 21anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
6 9first strand
Strand 2
I
23 26anti-parallel
Strand 3
I
76 81anti-parallel
Strand 4
I
66 71anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
12 15first strand
Strand 2
I
114 119parallel
Strand 3
I
90 97anti-parallel
Strand 4
I
32 38anti-parallel
Strand 5
I
44 51anti-parallel
Strand 6
I
56 58anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
6 9first strand
Strand 2
J
20 26anti-parallel
Strand 3
J
76 81anti-parallel
Strand 4
J
66 71anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
56 58first strand
Strand 2
J
44 51anti-parallel
Strand 3
J
32 38anti-parallel
Strand 4
J
90 97anti-parallel
Strand 5
J
114 116anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
6 9first strand
Strand 2
K
20 26anti-parallel
Strand 3
K
76 81anti-parallel
Strand 4
K
66 71anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 15first strand
Strand 2
K
114 119parallel
Strand 3
K
90 97anti-parallel
Strand 4
K
32 38anti-parallel
Strand 5
K
44 51anti-parallel
Strand 6
K
56 58anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
6 9first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
66 71anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
12 15first strand
Strand 2
L
114 119parallel
Strand 3
L
90 97anti-parallel
Strand 4
L
32 38anti-parallel
Strand 5
L
45 51anti-parallel
Strand 6
L
56 58anti-parallel
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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
8 10first strand
Strand 2
M
123 126anti-parallel
Strand 3
M
35 41anti-parallel
Strand 4
M
50 57anti-parallel
Strand 5
M
61 68anti-parallel
Strand 6
M
71 72anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
8 10first strand
Strand 2
M
123 126anti-parallel
Strand 3
M
35 41anti-parallel
Strand 4
M
50 57anti-parallel
Strand 5
M
61 68anti-parallel
Strand 6
M
76 78anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
107 113first strand
Strand 2
M
99 104anti-parallel
Strand 3
M
89 95anti-parallel
Strand 4
M
18 26anti-parallel
Strand 5
M
130 139anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
8 10first strand
Strand 2
N
123 126anti-parallel
Strand 3
N
35 41anti-parallel
Strand 4
N
50 57anti-parallel
Strand 5
N
61 68anti-parallel
Strand 6
N
71 72anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
8 10first strand
Strand 2
N
123 126anti-parallel
Strand 3
N
35 41anti-parallel
Strand 4
N
50 57anti-parallel
Strand 5
N
61 68anti-parallel
Strand 6
N
76 78anti-parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
107 113first strand
Strand 2
N
99 104anti-parallel
Strand 3
N
89 95anti-parallel
Strand 4
N
18 24anti-parallel
Strand 5
N
134 139anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
8 10first strand
Strand 2
O
123 126anti-parallel
Strand 3
O
35 41anti-parallel
Strand 4
O
50 57anti-parallel
Strand 5
O
61 68anti-parallel
Strand 6
O
71 72anti-parallel
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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
8 10first strand
Strand 2
O
123 126anti-parallel
Strand 3
O
35 41anti-parallel
Strand 4
O
50 57anti-parallel
Strand 5
O
61 68anti-parallel
Strand 6
O
76 78anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
108 113first strand
Strand 2
O
99 104anti-parallel
Strand 3
O
89 95anti-parallel
Strand 4
O
18 26anti-parallel
Strand 5
O
130 139anti-parallel
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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
9 10first strand
Strand 2
P
123 126anti-parallel
Strand 3
P
35 41anti-parallel
Strand 4
P
50 57anti-parallel
Strand 5
P
61 68anti-parallel
Strand 6
P
71 72anti-parallel
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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
9 10first strand
Strand 2
P
123 126anti-parallel
Strand 3
P
35 41anti-parallel
Strand 4
P
50 57anti-parallel
Strand 5
P
61 68anti-parallel
Strand 6
P
76 78anti-parallel
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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
107 113first strand
Strand 2
P
99 104anti-parallel
Strand 3
P
89 95anti-parallel
Strand 4
P
18 26anti-parallel
Strand 5
P
130 139anti-parallel
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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
8 11first strand
Strand 2
Q
123 126anti-parallel
Strand 3
Q
35 41anti-parallel
Strand 4
Q
50 57anti-parallel
Strand 5
Q
61 68anti-parallel
Strand 6
Q
71 72anti-parallel
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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
8 11first strand
Strand 2
Q
123 126anti-parallel
Strand 3
Q
35 41anti-parallel
Strand 4
Q
50 57anti-parallel
Strand 5
Q
61 68anti-parallel
Strand 6
Q
76 78anti-parallel
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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
107 113first strand
Strand 2
Q
99 104anti-parallel
Strand 3
Q
89 95anti-parallel
Strand 4
Q
19 26anti-parallel
Strand 5
Q
130 137anti-parallel
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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
8 11first strand
Strand 2
R
123 126anti-parallel
Strand 3
R
35 41anti-parallel
Strand 4
R
50 57anti-parallel
Strand 5
R
61 68anti-parallel
Strand 6
R
71 72anti-parallel
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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
8 11first strand
Strand 2
R
123 126anti-parallel
Strand 3
R
35 41anti-parallel
Strand 4
R
50 57anti-parallel
Strand 5
R
61 68anti-parallel
Strand 6
R
76 78anti-parallel
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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
107 113first strand
Strand 2
R
99 104anti-parallel
Strand 3
R
89 95anti-parallel
Strand 4
R
19 26anti-parallel
Strand 5
R
130 138anti-parallel
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