Analysis of interatomic Contacts of Structural Units in PDB entry:
9UCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UCE entry

There is 1 chain in PDB entry 9UCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7VAL 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9UCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
72 77Right-handed alpha
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
90 104Right-handed alpha
Helix 7
AA7
A
104 115Right-handed alpha
Helix 8
AA8
A
128 136Right-handed alpha
Helix 9
AA9
A
148 159Right-handed alpha
Helix 10
AB1
A
160 165Right-handed 310
Helix 11
AB2
A
194 199Right-handed alpha
Helix 12
AB3
A
212 217Right-handed alpha
Helix 13
AB4
A
218 228Right-handed alpha
Helix 14
AB5
A
236 241Right-handed alpha
Helix 15
AB6
A
261 268Right-handed alpha
Helix 16
AB7
A
287 302Right-handed alpha
Helix 17
AB8
A
316 320Right-handed 310
Helix 18
AB9
A
324 332Right-handed alpha
Helix 19
AC1
A
343 350Right-handed alpha
Helix 20
AC2
A
361 372Right-handed alpha
Helix 21
AC3
A
383 393Right-handed alpha
Helix 22
AC4
A
419 432Right-handed alpha
Helix 23
AC5
A
436 456Right-handed alpha
Helix 24
AC6
A
459 476Right-handed alpha
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There are 3 sheets in PDB entry 9UCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
37 42parallel
Strand 3
A
9 13parallel
Strand 4
A
119 123parallel
Strand 5
A
140 144parallel
Strand 6
A
207 209parallel
Strand 7
A
231 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
180 182anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
304 309parallel
Strand 3
A
275 279parallel
Strand 4
A
353 358parallel
Strand 5
A
375 377parallel
Strand 6
A
398 400parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il