Analysis of interatomic Contacts of Structural Units in PDB entry:
9UCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UCP entry

There are 3 chains in PDB entry 9UCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24ARG 396
B
 THR 333VAL 359
C
 VAL 2VAL 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9UCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 53Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
61 88Right-handed alpha
Helix 4
AA4
A
93 129Right-handed alpha
Helix 5
AA5
A
129 137Right-handed alpha
Helix 6
AA6
A
138 168Right-handed alpha
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
197 232Right-handed alpha
Helix 9
AA9
A
233 247Right-handed alpha
Helix 10
AB1
A
249 262Right-handed alpha
Helix 11
AB2
A
266 272Right-handed alpha
Helix 12
AB3
A
274 288Right-handed alpha
Helix 13
AB4
A
292 309Right-handed alpha
Helix 14
AB5
A
314 351Right-handed alpha
Helix 15
AB6
A
356 367Right-handed alpha
Helix 16
AB7
A
368 374Right-handed alpha
Helix 17
AB8
A
375 377Right-handed 310
Helix 18
AB9
A
387 392Right-handed alpha
Helix 19
AC1
B
334 356Right-handed alpha
Helix 20
AC2
C
86 90Right-handed 310
Helix 21
AC3
C
102 106Right-handed 310
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There are 3 sheets in PDB entry 9UCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
23 24anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 59first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
92 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
77 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il