Analysis of interatomic Contacts of Structural Units in PDB entry:
9UD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UD3 entry

There are 6 chains in PDB entry 9UD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 446
B	TYR 27	GLY 413
C	ASP 6	LEU 256
D	LEU 7	GLU 210
E	MET 1	LEU 198
F	MET 1	GLY 408

There are 92 helices in PDB entry 9UD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	85	Right-handed 310
Helix 2	AA2	A	107	112	Right-handed 310
Helix 3	AA3	A	114	126	Right-handed alpha
Helix 4	AA4	A	127	130	Right-handed 310
Helix 5	AA5	A	162	171	Right-handed alpha
Helix 6	AA6	A	171	182	Right-handed alpha
Helix 7	AA7	A	214	218	Right-handed 310
Helix 8	AA8	A	219	226	Right-handed alpha
Helix 9	AA9	A	241	254	Right-handed alpha
Helix 10	AB1	A	282	287	Right-handed alpha
Helix 11	AB2	A	310	314	Right-handed 310
Helix 12	AB3	A	351	356	Right-handed 310
Helix 13	AB4	A	379	383	Right-handed 310
Helix 14	AB5	A	389	400	Right-handed alpha
Helix 15	AB6	A	402	409	Right-handed alpha
Helix 16	AB7	A	410	413	Right-handed 310
Helix 17	AB8	A	414	424	Right-handed alpha
Helix 18	AB9	A	430	446	Right-handed alpha
Helix 19	AC1	B	27	29	Right-handed 310
Helix 20	AC2	B	30	35	Right-handed alpha
Helix 21	AC3	B	52	62	Right-handed alpha
Helix 22	AC4	B	64	87	Right-handed alpha
Helix 23	AC5	B	88	97	Right-handed alpha
Helix 24	AC6	B	99	106	Right-handed alpha
Helix 25	AC7	B	117	152	Right-handed alpha
Helix 26	AC8	B	158	168	Right-handed alpha
Helix 27	AC9	B	175	189	Right-handed alpha
Helix 28	AD1	B	203	216	Right-handed alpha
Helix 29	AD2	B	216	221	Right-handed alpha
Helix 30	AD3	B	238	244	Right-handed alpha
Helix 31	AD4	B	245	248	Right-handed 310
Helix 32	AD5	B	259	266	Right-handed alpha
Helix 33	AD6	B	276	290	Right-handed alpha
Helix 34	AD7	B	294	316	Right-handed alpha
Helix 35	AD8	B	320	325	Right-handed 310
Helix 36	AD9	B	326	331	Right-handed alpha
Helix 37	AE1	B	336	342	Right-handed alpha
Helix 38	AE2	B	353	374	Right-handed alpha
Helix 39	AE3	B	381	410	Right-handed alpha
Helix 40	AE4	C	7	33	Right-handed alpha
Helix 41	AE5	C	33	41	Right-handed alpha
Helix 42	AE6	C	42	54	Right-handed alpha
Helix 43	AE7	C	59	71	Right-handed alpha
Helix 44	AE8	C	79	81	Right-handed 310
Helix 45	AE9	C	92	97	Right-handed alpha
Helix 46	AF1	C	98	101	Right-handed 310
Helix 47	AF2	C	178	181	Right-handed 310
Helix 48	AF3	C	182	188	Right-handed alpha
Helix 49	AF4	C	224	239	Right-handed alpha
Helix 50	AF5	C	244	254	Right-handed alpha
Helix 51	AF6	D	7	11	Right-handed 310
Helix 52	AF7	D	28	35	Right-handed alpha
Helix 53	AF8	D	38	62	Right-handed alpha
Helix 54	AF9	D	70	94	Right-handed alpha
Helix 55	AG1	D	94	102	Right-handed alpha
Helix 56	AG2	D	102	107	Right-handed alpha
Helix 57	AG3	D	108	110	Right-handed 310
Helix 58	AG4	D	111	121	Right-handed alpha
Helix 59	AG5	D	126	158	Right-handed alpha
Helix 60	AG6	D	168	172	Right-handed 310
Helix 61	AG7	D	179	183	Right-handed 310
Helix 62	AG8	D	184	202	Right-handed alpha
Helix 63	AG9	D	203	206	Right-handed 310
Helix 64	AH1	E	2	14	Right-handed alpha
Helix 65	AH2	E	24	29	Right-handed alpha
Helix 66	AH3	E	34	64	Right-handed alpha
Helix 67	AH4	E	75	77	Right-handed 310
Helix 68	AH5	E	78	101	Right-handed alpha
Helix 69	AH6	E	102	107	Right-handed 310
Helix 70	AH7	E	119	133	Right-handed alpha
Helix 71	AH8	E	135	164	Right-handed alpha
Helix 72	AH9	E	165	167	Right-handed 310
Helix 73	AI1	E	175	191	Right-handed alpha
Helix 74	AI2	E	192	194	Right-handed 310
Helix 75	AI3	F	2	30	Right-handed alpha
Helix 76	AI4	F	54	61	Right-handed alpha
Helix 77	AI5	F	93	97	Right-handed 310
Helix 78	AI6	F	99	104	Right-handed alpha
Helix 79	AI7	F	111	113	Right-handed 310
Helix 80	AI8	F	124	130	Right-handed 310
Helix 81	AI9	F	155	158	Right-handed 310
Helix 82	AJ1	F	180	182	Right-handed 310
Helix 83	AJ2	F	185	195	Right-handed alpha
Helix 84	AJ3	F	196	199	Right-handed 310
Helix 85	AJ4	F	243	252	Right-handed alpha
Helix 86	AJ5	F	284	298	Right-handed alpha
Helix 87	AJ6	F	313	317	Right-handed 310
Helix 88	AJ7	F	319	330	Right-handed alpha
Helix 89	AJ8	F	343	347	Right-handed 310
Helix 90	AJ9	F	354	363	Right-handed alpha
Helix 91	AK1	F	369	373	Right-handed 310
Helix 92	AK2	F	380	395	Right-handed alpha

There are 15 sheets in PDB entry 9UD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	273	278	parallel
Strand 3	A	259	264	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	74	81	anti-parallel
Strand 4	A	50	51	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	68	69	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	148	152	parallel
Strand 4	A	188	193	parallel
Strand 5	A	206	210	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	323	327	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	256	257	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	72	77	anti-parallel
Strand 3	C	121	128	anti-parallel
Strand 4	C	133	143	anti-parallel
Strand 5	C	148	156	anti-parallel
Strand 6	C	162	169	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	117	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	217	219	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	163	164	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	119	120	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	82	first strand
Strand 2	F	107	109	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	213	first strand
Strand 2	F	167	172	anti-parallel
Strand 3	F	257	264	anti-parallel
Strand 4	F	132	141	anti-parallel
Strand 5	F	147	153	anti-parallel
Strand 6	F	223	229	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	178	first strand
Strand 2	F	201	204	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	339	first strand
Strand 2	F	305	311	parallel
Strand 3	F	276	280	parallel
Strand 4	F	374	378	parallel
Strand 5	F	401	404	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UD3