Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UDE entry

There are 2 chains in PDB entry 9UDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ALA 480
B	THR 4	ALA 480

There are 43 helices in PDB entry 9UDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	26	Right-handed alpha
Helix 2	AA2	A	50	55	Right-handed 310
Helix 3	AA3	A	61	71	Right-handed alpha
Helix 4	AA4	A	73	81	Right-handed alpha
Helix 5	AA5	A	114	127	Right-handed alpha
Helix 6	AA6	A	184	192	Right-handed alpha
Helix 7	AA7	A	218	223	Right-handed alpha
Helix 8	AA8	A	266	268	Right-handed 310
Helix 9	AA9	A	269	276	Right-handed alpha
Helix 10	AB1	A	280	287	Right-handed alpha
Helix 11	AB2	A	308	311	Right-handed 310
Helix 12	AB3	A	322	324	Right-handed 310
Helix 13	AB4	A	329	333	Right-handed 310
Helix 14	AB5	A	334	355	Right-handed alpha
Helix 15	AB6	A	364	376	Right-handed alpha
Helix 16	AB7	A	376	388	Right-handed alpha
Helix 17	AB8	A	399	404	Right-handed alpha
Helix 18	AB9	A	406	424	Right-handed alpha
Helix 19	AC1	A	424	436	Right-handed alpha
Helix 20	AC2	A	440	445	Right-handed 310
Helix 21	AC3	A	446	456	Right-handed alpha
Helix 22	AC4	A	468	476	Right-handed alpha
Helix 23	AC5	B	15	29	Right-handed alpha
Helix 24	AC6	B	50	55	Right-handed 310
Helix 25	AC7	B	61	71	Right-handed alpha
Helix 26	AC8	B	73	81	Right-handed alpha
Helix 27	AC9	B	114	128	Right-handed alpha
Helix 28	AD1	B	184	192	Right-handed alpha
Helix 29	AD2	B	218	223	Right-handed alpha
Helix 30	AD3	B	266	268	Right-handed 310
Helix 31	AD4	B	269	276	Right-handed alpha
Helix 32	AD5	B	280	287	Right-handed alpha
Helix 33	AD6	B	322	324	Right-handed 310
Helix 34	AD7	B	329	333	Right-handed 310
Helix 35	AD8	B	334	354	Right-handed alpha
Helix 36	AD9	B	364	376	Right-handed alpha
Helix 37	AE1	B	376	388	Right-handed alpha
Helix 38	AE2	B	399	404	Right-handed alpha
Helix 39	AE3	B	406	424	Right-handed alpha
Helix 40	AE4	B	424	436	Right-handed alpha
Helix 41	AE5	B	440	445	Right-handed 310
Helix 42	AE6	B	446	456	Right-handed alpha
Helix 43	AE7	B	468	476	Right-handed alpha

There are 12 sheets in PDB entry 9UDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	31	35	parallel
Strand 3	A	8	12	parallel
Strand 4	A	174	177	parallel
Strand 5	A	318	320	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	84	88	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	225	228	parallel
Strand 4	A	239	246	anti-parallel
Strand 5	A	250	257	anti-parallel
Strand 6	A	207	214	anti-parallel
Strand 7	A	290	291	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	225	228	parallel
Strand 4	A	239	246	anti-parallel
Strand 5	A	250	257	anti-parallel
Strand 6	A	207	214	anti-parallel
Strand 7	A	296	298	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	145	first strand
Strand 2	A	154	161	anti-parallel
Strand 3	A	167	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	303	306	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	31	35	parallel
Strand 3	B	8	12	parallel
Strand 4	B	174	177	parallel
Strand 5	B	318	320	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	84	88	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	225	228	parallel
Strand 4	B	239	246	anti-parallel
Strand 5	B	250	257	anti-parallel
Strand 6	B	207	214	anti-parallel
Strand 7	B	290	291	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	225	228	parallel
Strand 4	B	239	246	anti-parallel
Strand 5	B	250	257	anti-parallel
Strand 6	B	207	214	anti-parallel
Strand 7	B	296	298	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	145	first strand
Strand 2	B	154	161	anti-parallel
Strand 3	B	169	171	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	303	306	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	394	396	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDE