Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UDF entry

There are 6 chains in PDB entry 9UDF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 446
B	GLY 2	GLY 413
C	ASP 6	ASN 257
D	LYS 5	GLU 210
E	MET 1	LEU 198
F	MET 1	GLY 408

There are 87 helices in PDB entry 9UDF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	106	113	Right-handed 310
Helix 2	AA2	A	114	126	Right-handed alpha
Helix 3	AA3	A	127	131	Right-handed 310
Helix 4	AA4	A	162	168	Right-handed alpha
Helix 5	AA5	A	170	185	Right-handed alpha
Helix 6	AA6	A	219	228	Right-handed alpha
Helix 7	AA7	A	241	254	Right-handed alpha
Helix 8	AA8	A	282	287	Right-handed alpha
Helix 9	AA9	A	310	314	Right-handed 310
Helix 10	AB1	A	335	339	Right-handed 310
Helix 11	AB2	A	351	356	Right-handed 310
Helix 12	AB3	A	379	383	Right-handed 310
Helix 13	AB4	A	389	400	Right-handed alpha
Helix 14	AB5	A	401	409	Right-handed alpha
Helix 15	AB6	A	410	413	Right-handed 310
Helix 16	AB7	A	414	417	Right-handed 310
Helix 17	AB8	A	418	424	Right-handed alpha
Helix 18	AB9	A	430	446	Right-handed alpha
Helix 19	AC1	B	3	10	Right-handed alpha
Helix 20	AC2	B	11	15	Right-handed 310
Helix 21	AC3	B	23	35	Right-handed alpha
Helix 22	AC4	B	52	64	Right-handed alpha
Helix 23	AC5	B	64	87	Right-handed alpha
Helix 24	AC6	B	89	98	Right-handed alpha
Helix 25	AC7	B	99	108	Right-handed alpha
Helix 26	AC8	B	117	152	Right-handed alpha
Helix 27	AC9	B	158	168	Right-handed alpha
Helix 28	AD1	B	175	189	Right-handed alpha
Helix 29	AD2	B	191	195	Right-handed 310
Helix 30	AD3	B	203	216	Right-handed alpha
Helix 31	AD4	B	217	220	Right-handed 310
Helix 32	AD5	B	236	245	Right-handed alpha
Helix 33	AD6	B	246	248	Right-handed 310
Helix 34	AD7	B	259	266	Right-handed alpha
Helix 35	AD8	B	276	290	Right-handed alpha
Helix 36	AD9	B	294	316	Right-handed alpha
Helix 37	AE1	B	326	332	Right-handed alpha
Helix 38	AE2	B	335	343	Right-handed alpha
Helix 39	AE3	B	353	375	Right-handed alpha
Helix 40	AE4	B	381	410	Right-handed alpha
Helix 41	AE5	C	7	32	Right-handed alpha
Helix 42	AE6	C	33	53	Right-handed alpha
Helix 43	AE7	C	62	67	Right-handed alpha
Helix 44	AE8	C	87	91	Right-handed 310
Helix 45	AE9	C	92	97	Right-handed alpha
Helix 46	AF1	C	107	112	Right-handed 310
Helix 47	AF2	C	228	234	Right-handed alpha
Helix 48	AF3	C	244	250	Right-handed 310
Helix 49	AF4	D	6	17	Right-handed alpha
Helix 50	AF5	D	27	34	Right-handed alpha
Helix 51	AF6	D	37	62	Right-handed alpha
Helix 52	AF7	D	70	93	Right-handed alpha
Helix 53	AF8	D	94	102	Right-handed alpha
Helix 54	AF9	D	104	110	Right-handed alpha
Helix 55	AG1	D	111	121	Right-handed alpha
Helix 56	AG2	D	122	125	Right-handed 310
Helix 57	AG3	D	126	158	Right-handed alpha
Helix 58	AG4	D	183	202	Right-handed alpha
Helix 59	AG5	D	203	206	Right-handed 310
Helix 60	AG6	E	2	13	Right-handed alpha
Helix 61	AG7	E	24	31	Right-handed alpha
Helix 62	AG8	E	34	63	Right-handed alpha
Helix 63	AG9	E	78	102	Right-handed alpha
Helix 64	AH1	E	102	107	Right-handed alpha
Helix 65	AH2	E	109	117	Right-handed 310
Helix 66	AH3	E	119	133	Right-handed alpha
Helix 67	AH4	E	135	164	Right-handed alpha
Helix 68	AH5	E	165	167	Right-handed 310
Helix 69	AH6	E	175	191	Right-handed alpha
Helix 70	AH7	E	192	194	Right-handed 310
Helix 71	AH8	F	2	30	Right-handed alpha
Helix 72	AH9	F	54	63	Right-handed alpha
Helix 73	AI1	F	91	96	Right-handed alpha
Helix 74	AI2	F	99	104	Right-handed alpha
Helix 75	AI3	F	126	130	Right-handed 310
Helix 76	AI4	F	155	158	Right-handed 310
Helix 77	AI5	F	180	182	Right-handed 310
Helix 78	AI6	F	185	196	Right-handed alpha
Helix 79	AI7	F	197	199	Right-handed 310
Helix 80	AI8	F	243	250	Right-handed alpha
Helix 81	AI9	F	284	297	Right-handed alpha
Helix 82	AJ1	F	313	317	Right-handed 310
Helix 83	AJ2	F	319	330	Right-handed alpha
Helix 84	AJ3	F	354	363	Right-handed alpha
Helix 85	AJ4	F	369	373	Right-handed 310
Helix 86	AJ5	F	380	393	Right-handed alpha
Helix 87	AJ6	F	397	399	Right-handed 310

There are 12 sheets in PDB entry 9UDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	206	212	parallel
Strand 3	A	188	193	parallel
Strand 4	A	148	152	parallel
Strand 5	A	236	240	parallel
Strand 6	A	132	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	273	278	parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	322	327	parallel
Strand 5	A	296	301	anti-parallel
Strand 6	A	306	308	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	74	81	anti-parallel
Strand 4	A	50	51	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	67	69	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	256	257	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	75	76	anti-parallel
Strand 3	C	122	123	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	147	151	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	163	164	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	49	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	119	122	parallel
Strand 4	F	80	83	anti-parallel
Strand 5	F	107	109	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	213	first strand
Strand 2	F	167	172	anti-parallel
Strand 3	F	257	260	anti-parallel
Strand 4	F	133	139	anti-parallel
Strand 5	F	147	153	anti-parallel
Strand 6	F	223	229	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	178	first strand
Strand 2	F	201	204	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	351	352	first strand
Strand 2	F	335	339	parallel
Strand 3	F	305	311	parallel
Strand 4	F	276	281	parallel
Strand 5	F	374	378	parallel
Strand 6	F	401	403	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UDF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDF