Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UDM entry

There are 2 chains in PDB entry 9UDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 189	SER 490
B	PRO 2	LEU 589

There are 39 helices in PDB entry 9UDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	200	Right-handed alpha
Helix 2	AA2	A	225	240	Right-handed alpha
Helix 3	AA3	A	255	259	Right-handed alpha
Helix 4	AA4	A	260	263	Right-handed 310
Helix 5	AA5	A	268	272	Right-handed 310
Helix 6	AA6	A	289	302	Right-handed alpha
Helix 7	AA7	A	315	321	Right-handed alpha
Helix 8	AA8	A	328	341	Right-handed alpha
Helix 9	AA9	A	383	399	Right-handed alpha
Helix 10	AB1	A	439	444	Right-handed alpha
Helix 11	AB2	A	445	447	Right-handed 310
Helix 12	AB3	A	461	470	Right-handed alpha
Helix 13	AB4	A	473	477	Right-handed 310
Helix 14	AB5	A	483	490	Right-handed alpha
Helix 15	AB6	B	8	16	Right-handed alpha
Helix 16	AB7	B	20	32	Right-handed alpha
Helix 17	AB8	B	40	47	Right-handed alpha
Helix 18	AB9	B	76	88	Right-handed alpha
Helix 19	AC1	B	113	118	Right-handed alpha
Helix 20	AC2	B	132	149	Right-handed alpha
Helix 21	AC3	B	165	167	Right-handed 310
Helix 22	AC4	B	177	180	Right-handed 310
Helix 23	AC5	B	194	203	Right-handed alpha
Helix 24	AC6	B	207	216	Right-handed alpha
Helix 25	AC7	B	259	275	Right-handed alpha
Helix 26	AC8	B	276	278	Right-handed 310
Helix 27	AC9	B	311	319	Right-handed alpha
Helix 28	AD1	B	323	334	Right-handed alpha
Helix 29	AD2	B	360	373	Right-handed alpha
Helix 30	AD3	B	374	377	Right-handed 310
Helix 31	AD4	B	391	408	Right-handed alpha
Helix 32	AD5	B	419	424	Right-handed alpha
Helix 33	AD6	B	430	435	Right-handed alpha
Helix 34	AD7	B	444	448	Right-handed 310
Helix 35	AD8	B	454	465	Right-handed alpha
Helix 36	AD9	B	507	522	Right-handed alpha
Helix 37	AE1	B	527	531	Right-handed 310
Helix 38	AE2	B	565	572	Right-handed alpha
Helix 39	AE3	B	586	589	Right-handed 310

There are 11 sheets in PDB entry 9UDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	348	357	parallel
Strand 3	A	369	380	anti-parallel
Strand 4	A	452	460	anti-parallel
Strand 5	A	428	438	anti-parallel
Strand 6	A	413	423	anti-parallel
Strand 7	A	404	407	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	322	324	anti-parallel
Strand 3	A	277	278	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	34	38	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	283	285	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	230	233	anti-parallel
Strand 3	B	220	224	anti-parallel
Strand 4	B	171	176	anti-parallel
Strand 5	B	107	110	parallel
Strand 6	B	287	290	parallel
Strand 7	B	296	299	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	127	first strand
Strand 2	B	250	257	anti-parallel
Strand 3	B	157	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	192	193	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	310	first strand
Strand 2	B	346	351	anti-parallel
Strand 3	B	337	340	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	472	476	parallel
Strand 3	B	491	502	anti-parallel
Strand 4	B	479	483	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	472	476	parallel
Strand 3	B	491	502	anti-parallel
Strand 4	B	578	584	anti-parallel
Strand 5	B	556	564	anti-parallel
Strand 6	B	543	553	anti-parallel
Strand 7	B	534	537	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	449	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UDM