Analysis of interatomic Contacts of Structural Units in PDB entry:
9UEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UEJ entry

There are 4 chains in PDB entry 9UEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 384
B	MET 1	HIS 384
C	MET 1	HIS 384
D	MET 1	HIS 384

There are 60 helices in PDB entry 9UEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	34	46	Right-handed alpha
Helix 3	AA3	A	59	68	Right-handed alpha
Helix 4	AA4	A	78	80	Right-handed 310
Helix 5	AA5	A	81	93	Right-handed alpha
Helix 6	AA6	A	102	104	Right-handed 310
Helix 7	AA7	A	105	112	Right-handed alpha
Helix 8	AA8	A	113	120	Right-handed alpha
Helix 9	AA9	A	133	144	Right-handed alpha
Helix 10	AB1	A	174	184	Right-handed alpha
Helix 11	AB2	A	225	230	Right-handed alpha
Helix 12	AB3	A	245	256	Right-handed alpha
Helix 13	AB4	A	273	286	Right-handed alpha
Helix 14	AB5	A	327	347	Right-handed alpha
Helix 15	AB6	A	356	361	Right-handed alpha
Helix 16	AB7	A	362	374	Right-handed alpha
Helix 17	AB8	B	9	22	Right-handed alpha
Helix 18	AB9	B	34	46	Right-handed alpha
Helix 19	AC1	B	59	67	Right-handed alpha
Helix 20	AC2	B	78	80	Right-handed 310
Helix 21	AC3	B	81	93	Right-handed alpha
Helix 22	AC4	B	105	112	Right-handed alpha
Helix 23	AC5	B	113	121	Right-handed alpha
Helix 24	AC6	B	133	145	Right-handed alpha
Helix 25	AC7	B	174	184	Right-handed alpha
Helix 26	AC8	B	225	230	Right-handed alpha
Helix 27	AC9	B	245	256	Right-handed alpha
Helix 28	AD1	B	273	286	Right-handed alpha
Helix 29	AD2	B	327	347	Right-handed alpha
Helix 30	AD3	B	356	361	Right-handed alpha
Helix 31	AD4	B	362	373	Right-handed alpha
Helix 32	AD5	C	9	22	Right-handed alpha
Helix 33	AD6	C	34	45	Right-handed alpha
Helix 34	AD7	C	59	68	Right-handed alpha
Helix 35	AD8	C	79	93	Right-handed alpha
Helix 36	AD9	C	105	113	Right-handed alpha
Helix 37	AE1	C	113	120	Right-handed alpha
Helix 38	AE2	C	133	145	Right-handed alpha
Helix 39	AE3	C	174	184	Right-handed alpha
Helix 40	AE4	C	225	230	Right-handed alpha
Helix 41	AE5	C	245	256	Right-handed alpha
Helix 42	AE6	C	273	283	Right-handed alpha
Helix 43	AE7	C	327	346	Right-handed alpha
Helix 44	AE8	C	356	361	Right-handed alpha
Helix 45	AE9	C	362	373	Right-handed alpha
Helix 46	AF1	D	9	22	Right-handed alpha
Helix 47	AF2	D	34	46	Right-handed alpha
Helix 48	AF3	D	59	68	Right-handed alpha
Helix 49	AF4	D	78	80	Right-handed 310
Helix 50	AF5	D	81	93	Right-handed alpha
Helix 51	AF6	D	104	112	Right-handed alpha
Helix 52	AF7	D	113	121	Right-handed alpha
Helix 53	AF8	D	133	145	Right-handed alpha
Helix 54	AF9	D	174	184	Right-handed alpha
Helix 55	AG1	D	225	230	Right-handed alpha
Helix 56	AG2	D	245	256	Right-handed alpha
Helix 57	AG3	D	273	286	Right-handed alpha
Helix 58	AG4	D	327	347	Right-handed alpha
Helix 59	AG5	D	356	361	Right-handed alpha
Helix 60	AG6	D	362	373	Right-handed alpha

There are 16 sheets in PDB entry 9UEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	6	parallel
Strand 4	A	72	75	parallel
Strand 5	A	95	98	parallel
Strand 6	A	123	125	parallel
Strand 7	A	353	354	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	235	242	anti-parallel
Strand 4	A	148	160	parallel
Strand 5	A	293	305	anti-parallel
Strand 6	A	308	319	anti-parallel
Strand 7	A	377	383	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	193	197	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	27	32	parallel
Strand 3	B	2	6	parallel
Strand 4	B	72	75	parallel
Strand 5	B	95	98	parallel
Strand 6	B	123	125	parallel
Strand 7	B	353	354	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	186	190	anti-parallel
Strand 3	B	235	242	anti-parallel
Strand 4	B	211	218	anti-parallel
Strand 5	B	204	208	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	186	190	anti-parallel
Strand 3	B	235	242	anti-parallel
Strand 4	B	148	160	parallel
Strand 5	B	293	305	anti-parallel
Strand 6	B	308	319	anti-parallel
Strand 7	B	377	383	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	270	272	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	2	6	parallel
Strand 3	C	72	75	parallel
Strand 4	C	95	99	parallel
Strand 5	C	123	128	parallel
Strand 6	C	353	354	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	235	243	anti-parallel
Strand 4	C	148	160	parallel
Strand 5	C	293	305	anti-parallel
Strand 6	C	308	319	anti-parallel
Strand 7	C	377	383	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	193	197	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	270	272	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	27	31	parallel
Strand 3	D	2	6	parallel
Strand 4	D	72	75	parallel
Strand 5	D	95	98	parallel
Strand 6	D	123	125	parallel
Strand 7	D	353	354	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	186	190	anti-parallel
Strand 3	D	235	243	anti-parallel
Strand 4	D	214	218	anti-parallel
Strand 5	D	204	206	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	186	190	anti-parallel
Strand 3	D	235	243	anti-parallel
Strand 4	D	148	160	parallel
Strand 5	D	293	305	anti-parallel
Strand 6	D	308	319	anti-parallel
Strand 7	D	378	384	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	270	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UEJ