Analysis of interatomic Contacts of Structural Units in PDB entry:
9UEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UEP entry

There are 2 chains in PDB entry 9UEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 508	SER 654
C	SER 74	SER 975

There are 40 helices in PDB entry 9UEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	580	584	Right-handed 310
Helix 2	AA2	A	597	604	Right-handed alpha
Helix 3	AA3	C	283	287	Right-handed 310
Helix 4	AA4	C	312	319	Right-handed alpha
Helix 5	AA5	C	321	340	Right-handed alpha
Helix 6	AA6	C	372	374	Right-handed 310
Helix 7	AA7	C	382	398	Right-handed alpha
Helix 8	AA8	C	410	412	Right-handed 310
Helix 9	AA9	C	413	433	Right-handed alpha
Helix 10	AB1	C	434	439	Right-handed 310
Helix 11	AB2	C	440	446	Right-handed alpha
Helix 12	AB3	C	446	455	Right-handed alpha
Helix 13	AB4	C	471	478	Right-handed alpha
Helix 14	AB5	C	480	497	Right-handed alpha
Helix 15	AB6	C	500	514	Right-handed alpha
Helix 16	AB7	C	520	535	Right-handed alpha
Helix 17	AB8	C	543	554	Right-handed alpha
Helix 18	AB9	C	619	622	Right-handed 310
Helix 19	AC1	C	633	636	Right-handed 310
Helix 20	AC2	C	644	658	Right-handed alpha
Helix 21	AC3	C	663	680	Right-handed alpha
Helix 22	AC4	C	684	691	Right-handed alpha
Helix 23	AC5	C	692	698	Right-handed 310
Helix 24	AC6	C	700	719	Right-handed alpha
Helix 25	AC7	C	723	746	Right-handed alpha
Helix 26	AC8	C	755	773	Right-handed alpha
Helix 27	AC9	C	774	790	Right-handed alpha
Helix 28	AD1	C	798	800	Right-handed 310
Helix 29	AD2	C	801	813	Right-handed alpha
Helix 30	AD3	C	814	828	Right-handed alpha
Helix 31	AD4	C	830	841	Right-handed alpha
Helix 32	AD5	C	846	857	Right-handed alpha
Helix 33	AD6	C	864	866	Right-handed 310
Helix 34	AD7	C	867	878	Right-handed alpha
Helix 35	AD8	C	881	892	Right-handed alpha
Helix 36	AD9	C	892	901	Right-handed alpha
Helix 37	AE1	C	906	914	Right-handed alpha
Helix 38	AE2	C	920	936	Right-handed alpha
Helix 39	AE3	C	941	963	Right-handed alpha
Helix 40	AE4	C	964	974	Right-handed alpha

There are 13 sheets in PDB entry 9UEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	517	521	anti-parallel
Strand 3	A	562	566	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	531	533	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	552	first strand
Strand 2	A	607	613	anti-parallel
Strand 3	A	633	645	anti-parallel
Strand 4	A	621	628	anti-parallel
Strand 5	A	586	590	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	241	247	parallel
Strand 3	C	271	278	anti-parallel
Strand 4	C	263	264	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	118	first strand
Strand 2	C	182	188	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	156	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	207	first strand
Strand 2	C	210	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	300	first strand
Strand 2	C	306	311	anti-parallel
Strand 3	C	347	353	parallel
Strand 4	C	366	370	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	408	first strand
Strand 2	C	517	519	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	617	first strand
Strand 2	C	568	573	anti-parallel
Strand 3	C	558	562	anti-parallel
Strand 4	C	640	642	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	596	first strand
Strand 2	C	608	610	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	604	first strand
Strand 2	C	598	600	anti-parallel
Strand 3	C	629	631	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UEP