Analysis of interatomic Contacts of Structural Units in PDB entry:
9UER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UER entry

There are 8 chains in PDB entry 9UER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 T 1 C 19
H
 G 2 A 21
A
 VAL 1ARG 116
B
 VAL 1ARG 116
C
 VAL 1ARG 116
D
 VAL 1ARG 116
E
 MET 1ALA 351
F
 MET 1ALA 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 9UER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
68 74Right-handed alpha
Helix 5
AA5
A
74 81Right-handed alpha
Helix 6
AA6
A
82 88Right-handed alpha
Helix 7
AA7
A
89 101Right-handed alpha
Helix 8
AA8
A
103 115Right-handed alpha
Helix 9
AA9
B
14 24Right-handed alpha
Helix 10
AB1
B
27 46Right-handed alpha
Helix 11
AB2
B
51 63Right-handed alpha
Helix 12
AB3
B
68 74Right-handed alpha
Helix 13
AB4
B
74 81Right-handed alpha
Helix 14
AB5
B
82 88Right-handed alpha
Helix 15
AB6
B
89 101Right-handed alpha
Helix 16
AB7
B
103 115Right-handed alpha
Helix 17
AB8
C
14 24Right-handed alpha
Helix 18
AB9
C
27 46Right-handed alpha
Helix 19
AC1
C
51 63Right-handed alpha
Helix 20
AC2
C
68 74Right-handed alpha
Helix 21
AC3
C
74 81Right-handed alpha
Helix 22
AC4
C
82 88Right-handed alpha
Helix 23
AC5
C
89 101Right-handed alpha
Helix 24
AC6
C
103 115Right-handed alpha
Helix 25
AC7
D
14 24Right-handed alpha
Helix 26
AC8
D
27 46Right-handed alpha
Helix 27
AC9
D
51 63Right-handed alpha
Helix 28
AD1
D
68 74Right-handed alpha
Helix 29
AD2
D
74 81Right-handed alpha
Helix 30
AD3
D
82 88Right-handed alpha
Helix 31
AD4
D
89 101Right-handed alpha
Helix 32
AD5
D
103 115Right-handed alpha
Helix 33
AD6
E
40 50Right-handed alpha
Helix 34
AD7
E
160 164Right-handed alpha
Helix 35
AD8
E
171 175Right-handed 310
Helix 36
AD9
E
233 241Right-handed alpha
Helix 37
AE1
E
244 262Right-handed alpha
Helix 38
AE2
E
291 297Right-handed 310
Helix 39
AE3
E
304 320Right-handed alpha
Helix 40
AE4
E
341 351Right-handed alpha
Helix 41
AE5
F
40 50Right-handed alpha
Helix 42
AE6
F
51 57Right-handed alpha
Helix 43
AE7
F
160 165Right-handed alpha
Helix 44
AE8
F
171 175Right-handed 310
Helix 45
AE9
F
234 241Right-handed alpha
Helix 46
AF1
F
247 262Right-handed alpha
Helix 47
AF2
F
292 298Right-handed 310
Helix 48
AF3
F
307 325Right-handed alpha
Helix 49
AF4
F
341 351Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9UER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 182first strand
Strand 2
E
224 232anti-parallel
Strand 3
E
4 13anti-parallel
Strand 4
E
279 285anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 31first strand
Strand 2
E
34 39anti-parallel
Strand 3
E
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
230 233anti-parallel
Strand 3
F
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
29 30first strand
Strand 2
F
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 39first strand
Strand 2
F
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
279 283first strand
Strand 2
F
330 334anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il