Analysis of interatomic Contacts of Structural Units in PDB entry:
9UES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UES entry

There are 2 chains in PDB entry 9UES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LEU 69
B
 VAL 114PRO 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9UES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
46 53Right-handed alpha
Helix 3
AA3
B
119 126Right-handed alpha
Helix 4
AA4
B
127 134Right-handed alpha
Helix 5
AA5
B
154 158Right-handed 310
Helix 6
AA6
B
179 190Right-handed alpha
Helix 7
AA7
B
192 196Right-handed 310
Helix 8
AA8
B
222 235Right-handed alpha
Helix 9
AA9
B
235 240Right-handed alpha
Helix 10
AB1
B
258 271Right-handed alpha
Helix 11
AB2
B
357 376Right-handed alpha
Helix 12
AB3
B
380 392Right-handed alpha
Helix 13
AB4
B
411 417Right-handed alpha
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There are 6 sheets in PDB entry 9UES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
57 62anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
A
65 68anti-parallel
Strand 3
B
248 249anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
334 337parallel
Strand 3
B
352 355anti-parallel
Strand 4
B
346 347anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 166first strand
Strand 2
B
207 212parallel
Strand 3
B
142 147parallel
Strand 4
B
241 246parallel
Strand 5
B
273 277parallel
Strand 6
B
298 303parallel
Strand 7
B
327 330parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 430first strand
Strand 2
B
507 515anti-parallel
Strand 3
B
447 454anti-parallel
Strand 4
B
484 489anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 476first strand
Strand 2
B
461 466anti-parallel
Strand 3
B
494 502anti-parallel
Strand 4
B
435 443anti-parallel
Strand 5
B
518 520anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il