Analysis of interatomic Contacts of Structural Units in PDB entry:
9UF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UF9 entry

There are 3 chains in PDB entry 9UF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 VAL 2VAL 3
I
 ALA 5ALA 5
A
 SER 1HIS 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9UF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
59 63Right-handed 310
Helix 3
AA3
A
113 118Right-handed 310
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
138 146Right-handed alpha
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
227 237Right-handed alpha
Helix 9
AA9
A
256 258Right-handed 310
Helix 10
AB1
A
306 311Right-handed alpha
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There are 6 sheets in PDB entry 9UF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
15 22anti-parallel
Strand 4
A
3 10anti-parallel
Strand 5
A
166 170anti-parallel
Strand 6
A
153 157anti-parallel
Strand 7
A
314 318anti-parallel
Strand 8
A
323 327anti-parallel
Strand 9
A
184 187anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
98 108anti-parallel
Strand 4
A
40 43parallel
Strand 5
A
122 125anti-parallel
Strand 6
A
27 34parallel
Strand 7
A
15 22anti-parallel
Strand 8
A
3 10anti-parallel
Strand 9
A
166 170anti-parallel
Strand 10
A
153 157anti-parallel
Strand 11
A
314 318anti-parallel
Strand 12
A
323 327anti-parallel
Strand 13
A
184 187anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
110 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
195 202anti-parallel
Strand 3
A
261 264anti-parallel
Strand 4
A
271 273anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
195 202anti-parallel
Strand 3
A
213 217anti-parallel
Strand 4
A
303 305parallel
Strand 5
A
224 226anti-parallel
Strand 6
A
293 295parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
278 281anti-parallel
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