Analysis of interatomic Contacts of Structural Units in PDB entry:
9UFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UFB entry

There are 4 chains in PDB entry 9UFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ASP 661
B
 GLY 1LYS 277
C
 HIS 14LEU 204
D
 GLY 13HIS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9UFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
14 38Right-handed alpha
Helix 3
AA3
A
41 48Right-handed alpha
Helix 4
AA4
A
53 86Right-handed alpha
Helix 5
AA5
A
95 113Right-handed alpha
Helix 6
AA6
A
115 120Right-handed alpha
Helix 7
AA7
A
121 123Right-handed 310
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
138 162Right-handed alpha
Helix 10
AB1
A
173 178Right-handed alpha
Helix 11
AB2
A
185 193Right-handed alpha
Helix 12
AB3
A
195 203Right-handed alpha
Helix 13
AB4
A
206 214Right-handed alpha
Helix 14
AB5
A
221 225Right-handed 310
Helix 15
AB6
A
226 258Right-handed alpha
Helix 16
AB7
A
271 307Right-handed alpha
Helix 17
AB8
A
312 329Right-handed alpha
Helix 18
AB9
A
330 336Right-handed 310
Helix 19
AC1
A
341 355Right-handed alpha
Helix 20
AC2
A
355 368Right-handed alpha
Helix 21
AC3
A
378 400Right-handed alpha
Helix 22
AC4
A
403 411Right-handed alpha
Helix 23
AC5
A
415 425Right-handed alpha
Helix 24
AC6
A
427 444Right-handed alpha
Helix 25
AC7
A
449 461Right-handed alpha
Helix 26
AC8
A
468 478Right-handed alpha
Helix 27
AC9
A
488 490Right-handed 310
Helix 28
AD1
A
491 522Right-handed alpha
Helix 29
AD2
A
523 527Right-handed 310
Helix 30
AD3
A
538 543Right-handed 310
Helix 31
AD4
A
562 570Right-handed alpha
Helix 32
AD5
A
592 608Right-handed alpha
Helix 33
AD6
A
610 631Right-handed alpha
Helix 34
AD7
A
639 657Right-handed alpha
Helix 35
AD8
B
10 26Right-handed alpha
Helix 36
AD9
B
27 45Right-handed alpha
Helix 37
AE1
B
63 85Right-handed alpha
Helix 38
AE2
B
152 156Right-handed 310
Helix 39
AE3
B
190 194Right-handed 310
Helix 40
AE4
B
204 212Right-handed alpha
Helix 41
AE5
B
213 215Right-handed 310
Helix 42
AE6
C
21 50Right-handed alpha
Helix 43
AE7
C
67 93Right-handed alpha
Helix 44
AE8
C
94 113Right-handed alpha
Helix 45
AE9
C
115 126Right-handed alpha
Helix 46
AF1
C
134 166Right-handed alpha
Helix 47
AF2
C
170 197Right-handed alpha
Helix 48
AF3
C
199 204Right-handed alpha
Helix 49
AF4
D
14 37Right-handed alpha
Helix 50
AF5
D
42 64Right-handed alpha
Helix 51
AF6
D
78 105Right-handed alpha
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There are 3 sheets in PDB entry 9UFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 585first strand
Strand 2
A
636 638anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
106 107anti-parallel
Strand 3
B
137 141parallel
Strand 4
B
167 171anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
148 151anti-parallel
Strand 3
B
182 183anti-parallel
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