Analysis of interatomic Contacts of Structural Units in PDB entry:
9UFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UFT entry

There are 4 chains in PDB entry 9UFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ASP 661
B
 GLY 1LYS 277
C
 HIS 14LEU 204
D
 GLY 13HIS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9UFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 38Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
53 86Right-handed alpha
Helix 4
AA4
A
95 113Right-handed alpha
Helix 5
AA5
A
114 120Right-handed alpha
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
138 162Right-handed alpha
Helix 8
AA8
A
173 178Right-handed 310
Helix 9
AA9
A
185 194Right-handed alpha
Helix 10
AB1
A
195 214Right-handed alpha
Helix 11
AB2
A
226 238Right-handed alpha
Helix 12
AB3
A
242 260Right-handed alpha
Helix 13
AB4
A
271 307Right-handed alpha
Helix 14
AB5
A
312 329Right-handed alpha
Helix 15
AB6
A
330 336Right-handed 310
Helix 16
AB7
A
341 354Right-handed alpha
Helix 17
AB8
A
355 368Right-handed alpha
Helix 18
AB9
A
378 400Right-handed alpha
Helix 19
AC1
A
403 411Right-handed alpha
Helix 20
AC2
A
413 425Right-handed alpha
Helix 21
AC3
A
427 444Right-handed alpha
Helix 22
AC4
A
450 461Right-handed alpha
Helix 23
AC5
A
464 478Right-handed alpha
Helix 24
AC6
A
491 514Right-handed alpha
Helix 25
AC7
A
514 522Right-handed alpha
Helix 26
AC8
A
538 542Right-handed 310
Helix 27
AC9
A
562 570Right-handed alpha
Helix 28
AD1
A
590 608Right-handed alpha
Helix 29
AD2
A
610 631Right-handed alpha
Helix 30
AD3
A
639 656Right-handed alpha
Helix 31
AD4
B
10 45Right-handed alpha
Helix 32
AD5
B
63 84Right-handed alpha
Helix 33
AD6
B
190 194Right-handed 310
Helix 34
AD7
B
203 211Right-handed alpha
Helix 35
AD8
B
212 216Right-handed 310
Helix 36
AD9
C
21 49Right-handed alpha
Helix 37
AE1
C
59 64Right-handed alpha
Helix 38
AE2
C
67 92Right-handed alpha
Helix 39
AE3
C
94 126Right-handed alpha
Helix 40
AE4
C
133 168Right-handed alpha
Helix 41
AE5
C
170 199Right-handed alpha
Helix 42
AE6
C
199 204Right-handed alpha
Helix 43
AE7
D
14 37Right-handed alpha
Helix 44
AE8
D
42 65Right-handed alpha
Helix 45
AE9
D
71 75Right-handed 310
Helix 46
AF1
D
78 105Right-handed alpha
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There are 4 sheets in PDB entry 9UFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
635 638anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
115 117anti-parallel
Strand 3
B
106 107anti-parallel
Strand 4
B
137 143parallel
Strand 5
B
167 171anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
115 117anti-parallel
Strand 3
B
106 107anti-parallel
Strand 4
B
137 143parallel
Strand 5
B
159 163parallel
Strand 6
B
148 151anti-parallel
Strand 7
B
182 183anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
197 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il