Analysis of interatomic Contacts of Structural Units in PDB entry:
9UFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UFW entry

There are 4 chains in PDB entry 9UFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ASP 661
C
 HIS 14LEU 204
D
 GLY 13HIS 109
B
 GLY 1LYS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9UFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 38Right-handed alpha
Helix 2
AA2
A
42 47Right-handed alpha
Helix 3
AA3
A
53 86Right-handed alpha
Helix 4
AA4
A
87 90Right-handed 310
Helix 5
AA5
A
95 113Right-handed alpha
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
138 162Right-handed alpha
Helix 8
AA8
A
173 177Right-handed 310
Helix 9
AA9
A
185 195Right-handed alpha
Helix 10
AB1
A
196 214Right-handed alpha
Helix 11
AB2
A
221 225Right-handed 310
Helix 12
AB3
A
226 243Right-handed alpha
Helix 13
AB4
A
244 247Right-handed 310
Helix 14
AB5
A
248 259Right-handed alpha
Helix 15
AB6
A
271 306Right-handed alpha
Helix 16
AB7
A
312 329Right-handed alpha
Helix 17
AB8
A
330 336Right-handed 310
Helix 18
AB9
A
341 355Right-handed alpha
Helix 19
AC1
A
355 366Right-handed alpha
Helix 20
AC2
A
378 391Right-handed alpha
Helix 21
AC3
A
392 397Right-handed alpha
Helix 22
AC4
A
403 408Right-handed alpha
Helix 23
AC5
A
413 428Right-handed alpha
Helix 24
AC6
A
428 444Right-handed alpha
Helix 25
AC7
A
449 461Right-handed alpha
Helix 26
AC8
A
468 478Right-handed alpha
Helix 27
AC9
A
488 490Right-handed 310
Helix 28
AD1
A
491 522Right-handed alpha
Helix 29
AD2
A
523 526Right-handed 310
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
562 571Right-handed alpha
Helix 32
AD5
A
590 595Right-handed alpha
Helix 33
AD6
A
596 608Right-handed alpha
Helix 34
AD7
A
610 630Right-handed alpha
Helix 35
AD8
A
639 657Right-handed alpha
Helix 36
AD9
C
21 50Right-handed alpha
Helix 37
AE1
C
59 64Right-handed alpha
Helix 38
AE2
C
67 92Right-handed alpha
Helix 39
AE3
C
94 126Right-handed alpha
Helix 40
AE4
C
133 168Right-handed alpha
Helix 41
AE5
C
170 198Right-handed alpha
Helix 42
AE6
C
199 204Right-handed alpha
Helix 43
AE7
D
14 38Right-handed alpha
Helix 44
AE8
D
42 65Right-handed alpha
Helix 45
AE9
D
78 105Right-handed alpha
Helix 46
AF1
B
10 45Right-handed alpha
Helix 47
AF2
B
62 85Right-handed alpha
Helix 48
AF3
B
188 194Right-handed 310
Helix 49
AF4
B
203 212Right-handed alpha
Helix 50
AF5
B
213 216Right-handed 310
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There are 4 sheets in PDB entry 9UFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
635 638anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
105 109anti-parallel
Strand 3
B
139 141parallel
Strand 4
B
167 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
261 262anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
196 199parallel
Strand 3
B
178 183anti-parallel
Strand 4
B
148 151anti-parallel
Strand 5
B
159 161anti-parallel
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