Analysis of interatomic Contacts of Structural Units in PDB entry:
9UG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UG3 entry

There are 4 chains in PDB entry 9UG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	ASP 1146
B	ALA 27	ASP 1146
C	ALA 27	ASP 1146
D	ALA 23	ARG 203

There are 72 helices in PDB entry 9UG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	71	Right-handed 310
Helix 2	AA2	A	294	304	Right-handed alpha
Helix 3	AA3	A	337	343	Right-handed alpha
Helix 4	AA4	A	365	370	Right-handed alpha
Helix 5	AA5	A	383	388	Right-handed alpha
Helix 6	AA6	A	403	405	Right-handed 310
Helix 7	AA7	A	406	411	Right-handed alpha
Helix 8	AA8	A	418	423	Right-handed alpha
Helix 9	AA9	A	619	624	Right-handed alpha
Helix 10	AB1	A	625	628	Right-handed 310
Helix 11	AB2	A	737	744	Right-handed alpha
Helix 12	AB3	A	746	755	Right-handed alpha
Helix 13	AB4	A	758	783	Right-handed alpha
Helix 14	AB5	A	816	826	Right-handed alpha
Helix 15	AB6	A	866	885	Right-handed alpha
Helix 16	AB7	A	886	891	Right-handed alpha
Helix 17	AB8	A	897	908	Right-handed alpha
Helix 18	AB9	A	913	918	Right-handed alpha
Helix 19	AC1	A	919	940	Right-handed alpha
Helix 20	AC2	A	945	965	Right-handed alpha
Helix 21	AC3	A	966	968	Right-handed 310
Helix 22	AC4	A	976	984	Right-handed alpha
Helix 23	AC5	A	985	1033	Right-handed alpha
Helix 24	AC6	A	1125	1129	Right-handed 310
Helix 25	AC7	A	1141	1146	Right-handed alpha
Helix 26	AC8	B	245	249	Right-handed 310
Helix 27	AC9	B	253	257	Right-handed 310
Helix 28	AD1	B	294	304	Right-handed alpha
Helix 29	AD2	B	337	343	Right-handed alpha
Helix 30	AD3	B	364	370	Right-handed alpha
Helix 31	AD4	B	383	389	Right-handed 310
Helix 32	AD5	B	405	410	Right-handed 310
Helix 33	AD6	B	416	422	Right-handed alpha
Helix 34	AD7	B	569	571	Right-handed 310
Helix 35	AD8	B	737	744	Right-handed alpha
Helix 36	AD9	B	747	754	Right-handed alpha
Helix 37	AE1	B	755	757	Right-handed 310
Helix 38	AE2	B	758	783	Right-handed alpha
Helix 39	AE3	B	816	826	Right-handed alpha
Helix 40	AE4	B	866	885	Right-handed alpha
Helix 41	AE5	B	897	908	Right-handed alpha
Helix 42	AE6	B	912	939	Right-handed alpha
Helix 43	AE7	B	945	968	Right-handed alpha
Helix 44	AE8	B	976	982	Right-handed alpha
Helix 45	AE9	B	985	1033	Right-handed alpha
Helix 46	AF1	B	1141	1146	Right-handed alpha
Helix 47	AF2	C	294	304	Right-handed alpha
Helix 48	AF3	C	339	344	Right-handed alpha
Helix 49	AF4	C	349	353	Right-handed 310
Helix 50	AF5	C	364	370	Right-handed alpha
Helix 51	AF6	C	383	388	Right-handed alpha
Helix 52	AF7	C	405	410	Right-handed 310
Helix 53	AF8	C	416	422	Right-handed alpha
Helix 54	AF9	C	502	505	Right-handed 310
Helix 55	AG1	C	684	689	Right-handed alpha
Helix 56	AG2	C	737	743	Right-handed alpha
Helix 57	AG3	C	746	754	Right-handed alpha
Helix 58	AG4	C	755	757	Right-handed 310
Helix 59	AG5	C	758	781	Right-handed alpha
Helix 60	AG6	C	816	826	Right-handed alpha
Helix 61	AG7	C	853	857	Right-handed 310
Helix 62	AG8	C	866	885	Right-handed alpha
Helix 63	AG9	C	897	907	Right-handed alpha
Helix 64	AH1	C	908	910	Right-handed 310
Helix 65	AH2	C	912	919	Right-handed alpha
Helix 66	AH3	C	919	940	Right-handed alpha
Helix 67	AH4	C	950	965	Right-handed alpha
Helix 68	AH5	C	966	968	Right-handed 310
Helix 69	AH6	C	976	984	Right-handed alpha
Helix 70	AH7	C	985	1032	Right-handed alpha
Helix 71	AH8	C	1116	1118	Right-handed 310
Helix 72	AH9	C	1141	1146	Right-handed alpha

There are 47 sheets in PDB entry 9UG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	89	94	anti-parallel
Strand 5	A	189	195	anti-parallel
Strand 6	A	205	208	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	220	223	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	568	parallel
Strand 3	C	572	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	271	280	anti-parallel
Strand 3	A	284	290	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	166	172	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	227	229	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	319	first strand
Strand 2	A	592	600	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	539	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	575	577	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	402	anti-parallel
Strand 3	A	508	515	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	565	568	anti-parallel
Strand 3	B	42	43	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	667	first strand
Strand 2	A	670	673	anti-parallel
Strand 3	A	693	696	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	B	788	789	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1123	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1080	1083	anti-parallel
Strand 4	A	1132	1134	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1096	first strand
Strand 2	A	1103	1105	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	89	95	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	200	206	anti-parallel
Strand 7	B	224	230	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	172	first strand
Strand 2	B	126	133	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	101	107	anti-parallel
Strand 5	B	237	242	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	595	600	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	592	593	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	539	543	parallel
Strand 3	B	548	553	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	572	577	anti-parallel
Strand 6	B	565	568	anti-parallel
Strand 7	C	42	43	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	403	anti-parallel
Strand 3	B	524	525	anti-parallel
Strand 4	B	361	362	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	403	anti-parallel
Strand 3	B	507	517	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	672	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	C	788	789	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1076	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1083	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1120	1122	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel
Strand 3	B	1113	1114	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	60	66	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	208	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	174	first strand
Strand 2	C	125	129	anti-parallel
Strand 3	C	117	122	anti-parallel
Strand 4	C	103	107	anti-parallel
Strand 5	C	237	241	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	595	599	anti-parallel
Strand 3	C	610	612	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	592	593	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	432	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	524	525	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	693	696	parallel
Strand 3	C	670	673	anti-parallel
Strand 4	C	665	667	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	715	first strand
Strand 2	C	1072	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1048	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1052	1056	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1083	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	199	200	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	136	141	anti-parallel
Strand 3	D	183	189	anti-parallel
Strand 4	D	192	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UG3