Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UGC entry

There are 2 chains in PDB entry 9UGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 73THR 918
B
 ASP 41HIS 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9UGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 81Right-handed alpha
Helix 2
AA2
A
89 100Right-handed alpha
Helix 3
AA3
A
110 121Right-handed alpha
Helix 4
AA4
A
122 138Right-handed alpha
Helix 5
AA5
A
140 173Right-handed alpha
Helix 6
AA6
A
192 196Right-handed 310
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
284 315Right-handed alpha
Helix 9
AA9
A
318 334Right-handed alpha
Helix 10
AB1
A
337 356Right-handed alpha
Helix 11
AB2
A
363 371Right-handed alpha
Helix 12
AB3
A
400 411Right-handed alpha
Helix 13
AB4
A
420 430Right-handed alpha
Helix 14
AB5
A
433 441Right-handed alpha
Helix 15
AB6
A
476 488Right-handed alpha
Helix 16
AB7
A
491 509Right-handed alpha
Helix 17
AB8
A
540 550Right-handed alpha
Helix 18
AB9
A
561 573Right-handed alpha
Helix 19
AC1
A
580 585Right-handed alpha
Helix 20
AC2
A
593 604Right-handed alpha
Helix 21
AC3
A
611 625Right-handed alpha
Helix 22
AC4
A
635 637Right-handed 310
Helix 23
AC5
A
638 645Right-handed alpha
Helix 24
AC6
A
655 662Right-handed alpha
Helix 25
AC7
A
670 713Right-handed alpha
Helix 26
AC8
A
718 737Right-handed alpha
Helix 27
AC9
A
751 779Right-handed alpha
Helix 28
AD1
A
790 805Right-handed alpha
Helix 29
AD2
A
805 811Right-handed alpha
Helix 30
AD3
A
822 843Right-handed alpha
Helix 31
AD4
A
851 878Right-handed alpha
Helix 32
AD5
A
879 888Right-handed alpha
Helix 33
AD6
A
898 918Right-handed alpha
Helix 34
AD7
B
42 51Right-handed alpha
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There are 5 sheets in PDB entry 9UGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
187 191anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
223 225anti-parallel
Strand 3
A
251 253anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
664 666anti-parallel
Strand 3
A
649 650parallel
Strand 4
A
629 633parallel
Strand 5
A
374 378parallel
Strand 6
A
553 557parallel
Strand 7
A
606 607parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
524 533anti-parallel
Strand 3
A
511 519anti-parallel
Strand 4
A
469 475anti-parallel
Strand 5
A
457 463anti-parallel
Strand 6
A
444 452anti-parallel
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