Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UGG entry

There are 6 chains in PDB entry 9UGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ASP 250
B	ASN 2	GLY 249
C	MET 1	ASP 250
D	MET 1	PHE 251
E	LEU 3	GLN 644
F	MET 1	GLN 644

There are 74 helices in PDB entry 9UGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	55	Right-handed alpha
Helix 2	AA2	A	56	58	Right-handed 310
Helix 3	AA3	A	72	76	Right-handed 310
Helix 4	AA4	A	77	88	Right-handed alpha
Helix 5	AA5	A	103	109	Right-handed alpha
Helix 6	AA6	A	119	131	Right-handed alpha
Helix 7	AA7	A	147	161	Right-handed alpha
Helix 8	AA8	A	181	194	Right-handed alpha
Helix 9	AA9	A	206	210	Right-handed 310
Helix 10	AB1	A	232	242	Right-handed alpha
Helix 11	AB2	B	48	55	Right-handed alpha
Helix 12	AB3	B	72	76	Right-handed 310
Helix 13	AB4	B	82	88	Right-handed alpha
Helix 14	AB5	B	103	108	Right-handed alpha
Helix 15	AB6	B	109	114	Right-handed alpha
Helix 16	AB7	B	128	134	Right-handed alpha
Helix 17	AB8	B	157	162	Right-handed alpha
Helix 18	AB9	B	177	194	Right-handed alpha
Helix 19	AC1	B	233	248	Right-handed alpha
Helix 20	AC2	C	48	53	Right-handed alpha
Helix 21	AC3	C	77	86	Right-handed alpha
Helix 22	AC4	C	103	108	Right-handed alpha
Helix 23	AC5	C	112	116	Right-handed 310
Helix 24	AC6	C	121	128	Right-handed alpha
Helix 25	AC7	C	150	159	Right-handed alpha
Helix 26	AC8	C	177	189	Right-handed alpha
Helix 27	AC9	C	190	193	Right-handed 310
Helix 28	AD1	C	232	243	Right-handed alpha
Helix 29	AD2	D	48	56	Right-handed alpha
Helix 30	AD3	D	78	89	Right-handed alpha
Helix 31	AD4	D	103	109	Right-handed alpha
Helix 32	AD5	D	118	131	Right-handed alpha
Helix 33	AD6	D	135	139	Right-handed 310
Helix 34	AD7	D	149	162	Right-handed alpha
Helix 35	AD8	D	171	175	Right-handed 310
Helix 36	AD9	D	177	195	Right-handed alpha
Helix 37	AE1	D	232	248	Right-handed alpha
Helix 38	AE2	E	4	12	Right-handed alpha
Helix 39	AE3	E	19	40	Right-handed alpha
Helix 40	AE4	E	46	50	Right-handed 310
Helix 41	AE5	E	52	85	Right-handed alpha
Helix 42	AE6	E	85	93	Right-handed alpha
Helix 43	AE7	E	94	96	Right-handed 310
Helix 44	AE8	E	98	124	Right-handed alpha
Helix 45	AE9	E	127	138	Right-handed alpha
Helix 46	AF1	E	151	175	Right-handed alpha
Helix 47	AF2	E	176	178	Right-handed 310
Helix 48	AF3	E	201	220	Right-handed alpha
Helix 49	AF4	E	229	258	Right-handed alpha
Helix 50	AF5	E	266	279	Right-handed alpha
Helix 51	AF6	E	282	307	Right-handed alpha
Helix 52	AF7	E	520	550	Right-handed alpha
Helix 53	AF8	E	553	566	Right-handed alpha
Helix 54	AF9	E	573	608	Right-handed alpha
Helix 55	AG1	E	615	643	Right-handed alpha
Helix 56	AG2	F	2	13	Right-handed alpha
Helix 57	AG3	F	18	40	Right-handed alpha
Helix 58	AG4	F	48	52	Right-handed 310
Helix 59	AG5	F	57	84	Right-handed alpha
Helix 60	AG6	F	87	95	Right-handed alpha
Helix 61	AG7	F	98	138	Right-handed alpha
Helix 62	AG8	F	153	160	Right-handed alpha
Helix 63	AG9	F	162	175	Right-handed alpha
Helix 64	AH1	F	176	178	Right-handed 310
Helix 65	AH2	F	199	220	Right-handed alpha
Helix 66	AH3	F	224	246	Right-handed alpha
Helix 67	AH4	F	246	257	Right-handed alpha
Helix 68	AH5	F	266	279	Right-handed alpha
Helix 69	AH6	F	281	308	Right-handed alpha
Helix 70	AH7	F	524	550	Right-handed alpha
Helix 71	AH8	F	553	567	Right-handed alpha
Helix 72	AH9	F	571	584	Right-handed alpha
Helix 73	AI1	F	587	605	Right-handed alpha
Helix 74	AI2	F	618	643	Right-handed alpha

There are 10 sheets in PDB entry 9UGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	22	26	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	199	203	parallel
Strand 3	A	37	41	parallel
Strand 4	A	214	218	parallel
Strand 5	A	223	228	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	4	11	anti-parallel
Strand 3	B	63	68	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	167	170	parallel
Strand 3	B	199	202	parallel
Strand 4	B	37	39	parallel
Strand 5	B	214	218	parallel
Strand 6	B	223	228	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	4	11	anti-parallel
Strand 3	C	31	32	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	4	11	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	199	203	parallel
Strand 3	C	37	41	parallel
Strand 4	C	216	219	parallel
Strand 5	C	222	226	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	32	first strand
Strand 2	D	4	13	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	37	41	parallel
Strand 3	D	214	217	parallel
Strand 4	D	226	228	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	167	169	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGG