Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UGM entry

There are 2 chains in PDB entry 9UGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	TYR 531
B	ASN 9	TYR 531

There are 33 helices in PDB entry 9UGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed alpha
Helix 3	AA3	A	59	65	Right-handed 310
Helix 4	AA4	A	95	100	Right-handed 310
Helix 5	AA5	A	109	119	Right-handed alpha
Helix 6	AA6	A	126	137	Right-handed alpha
Helix 7	AA7	A	165	179	Right-handed alpha
Helix 8	AA8	A	210	216	Right-handed alpha
Helix 9	AA9	A	217	220	Right-handed 310
Helix 10	AB1	A	270	282	Right-handed alpha
Helix 11	AB2	A	286	293	Right-handed alpha
Helix 12	AB3	A	362	366	Right-handed 310
Helix 13	AB4	A	412	430	Right-handed alpha
Helix 14	AB5	A	431	435	Right-handed 310
Helix 15	AB6	A	450	462	Right-handed alpha
Helix 16	AB7	A	500	504	Right-handed 310
Helix 17	AB8	A	512	531	Right-handed alpha
Helix 18	AB9	B	25	34	Right-handed alpha
Helix 19	AC1	B	53	58	Right-handed alpha
Helix 20	AC2	B	59	66	Right-handed 310
Helix 21	AC3	B	95	100	Right-handed 310
Helix 22	AC4	B	109	119	Right-handed alpha
Helix 23	AC5	B	126	137	Right-handed alpha
Helix 24	AC6	B	165	177	Right-handed alpha
Helix 25	AC7	B	210	216	Right-handed alpha
Helix 26	AC8	B	270	282	Right-handed alpha
Helix 27	AC9	B	286	292	Right-handed alpha
Helix 28	AD1	B	362	366	Right-handed 310
Helix 29	AD2	B	412	430	Right-handed alpha
Helix 30	AD3	B	431	435	Right-handed 310
Helix 31	AD4	B	450	462	Right-handed alpha
Helix 32	AD5	B	500	504	Right-handed 310
Helix 33	AD6	B	512	530	Right-handed alpha

There are 16 sheets in PDB entry 9UGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	41	45	parallel
Strand 3	A	14	20	parallel
Strand 4	A	256	268	parallel
Strand 5	A	244	251	anti-parallel
Strand 6	A	232	238	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	41	45	parallel
Strand 3	A	14	20	parallel
Strand 4	A	256	268	parallel
Strand 5	A	496	498	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	87	88	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	156	160	parallel
Strand 3	A	199	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	332	338	anti-parallel
Strand 3	A	349	354	anti-parallel
Strand 4	A	373	380	anti-parallel
Strand 5	A	316	320	anti-parallel
Strand 6	A	438	443	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	299	300	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	463	464	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	401	403	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	41	44	parallel
Strand 3	B	14	20	parallel
Strand 4	B	256	268	parallel
Strand 5	B	244	251	anti-parallel
Strand 6	B	232	238	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	41	44	parallel
Strand 3	B	14	20	parallel
Strand 4	B	256	268	parallel
Strand 5	B	496	498	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	87	88	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	156	160	parallel
Strand 3	B	199	200	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	334	338	anti-parallel
Strand 3	B	349	354	anti-parallel
Strand 4	B	373	380	anti-parallel
Strand 5	B	316	320	anti-parallel
Strand 6	B	438	443	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	299	300	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	463	464	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	401	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGM