Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UGQ entry

There are 3 chains in PDB entry 9UGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	GLN 871
B	MET 1	GLN 871
E	MET 1	GLU 15

There are 60 helices in PDB entry 9UGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	84	Right-handed alpha
Helix 2	AA2	A	93	101	Right-handed alpha
Helix 3	AA3	A	122	134	Right-handed alpha
Helix 4	AA4	A	200	207	Right-handed alpha
Helix 5	AA5	A	263	278	Right-handed alpha
Helix 6	AA6	A	309	317	Right-handed alpha
Helix 7	AA7	A	327	349	Right-handed alpha
Helix 8	AA8	A	401	419	Right-handed alpha
Helix 9	AA9	A	423	427	Right-handed 310
Helix 10	AB1	A	430	447	Right-handed alpha
Helix 11	AB2	A	449	466	Right-handed alpha
Helix 12	AB3	A	474	479	Right-handed 310
Helix 13	AB4	A	490	516	Right-handed alpha
Helix 14	AB5	A	525	529	Right-handed 310
Helix 15	AB6	A	539	554	Right-handed alpha
Helix 16	AB7	A	560	575	Right-handed alpha
Helix 17	AB8	A	586	598	Right-handed alpha
Helix 18	AB9	A	600	615	Right-handed alpha
Helix 19	AC1	A	626	641	Right-handed alpha
Helix 20	AC2	A	646	664	Right-handed alpha
Helix 21	AC3	A	691	706	Right-handed alpha
Helix 22	AC4	A	708	724	Right-handed alpha
Helix 23	AC5	A	749	760	Right-handed alpha
Helix 24	AC6	A	765	770	Right-handed alpha
Helix 25	AC7	A	771	779	Right-handed alpha
Helix 26	AC8	A	792	802	Right-handed alpha
Helix 27	AC9	A	809	821	Right-handed alpha
Helix 28	AD1	A	848	861	Right-handed alpha
Helix 29	AD2	B	17	19	Right-handed 310
Helix 30	AD3	B	67	69	Right-handed 310
Helix 31	AD4	B	70	82	Right-handed alpha
Helix 32	AD5	B	93	101	Right-handed alpha
Helix 33	AD6	B	122	134	Right-handed alpha
Helix 34	AD7	B	200	209	Right-handed alpha
Helix 35	AD8	B	265	278	Right-handed alpha
Helix 36	AD9	B	309	317	Right-handed alpha
Helix 37	AE1	B	327	349	Right-handed alpha
Helix 38	AE2	B	401	419	Right-handed alpha
Helix 39	AE3	B	430	446	Right-handed alpha
Helix 40	AE4	B	449	465	Right-handed alpha
Helix 41	AE5	B	474	478	Right-handed 310
Helix 42	AE6	B	490	516	Right-handed alpha
Helix 43	AE7	B	525	529	Right-handed 310
Helix 44	AE8	B	538	554	Right-handed alpha
Helix 45	AE9	B	560	575	Right-handed alpha
Helix 46	AF1	B	586	598	Right-handed alpha
Helix 47	AF2	B	599	617	Right-handed alpha
Helix 48	AF3	B	626	641	Right-handed alpha
Helix 49	AF4	B	646	664	Right-handed alpha
Helix 50	AF5	B	680	684	Right-handed 310
Helix 51	AF6	B	686	691	Right-handed alpha
Helix 52	AF7	B	691	706	Right-handed alpha
Helix 53	AF8	B	708	723	Right-handed alpha
Helix 54	AF9	B	749	760	Right-handed alpha
Helix 55	AG1	B	769	773	Right-handed 310
Helix 56	AG2	B	792	802	Right-handed alpha
Helix 57	AG3	B	808	821	Right-handed alpha
Helix 58	AG4	B	848	862	Right-handed alpha
Helix 59	AG5	E	2	8	Right-handed alpha
Helix 60	AG6	E	9	11	Right-handed 310

There are 13 sheets in PDB entry 9UGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	14	15	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	44	48	anti-parallel
Strand 3	A	87	91	anti-parallel
Strand 4	A	114	117	anti-parallel
Strand 5	A	57	63	anti-parallel
Strand 6	A	153	159	anti-parallel
Strand 7	A	146	147	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	229	first strand
Strand 2	A	232	239	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	296	299	anti-parallel
Strand 5	A	290	293	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	361	363	anti-parallel
Strand 3	A	369	371	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	824	827	anti-parallel
Strand 3	A	830	833	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	727	first strand
Strand 2	A	735	737	anti-parallel
Strand 3	A	742	743	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	14	15	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	114	117	anti-parallel
Strand 5	B	57	63	anti-parallel
Strand 6	B	153	159	anti-parallel
Strand 7	B	146	147	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	183	184	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	227	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	296	302	anti-parallel
Strand 5	B	287	293	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	361	363	anti-parallel
Strand 3	B	369	371	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	734	737	anti-parallel
Strand 3	B	742	743	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	833	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UGQ