Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UH4 entry

There are 15 chains in PDB entry 9UH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLY 742
B	THR 1	GLY 732
C	SER 1	TYR 80
D	ILE 4	ASP 141
E	VAL 1	PRO 64
F	ASP 1	ARG 161
I	MET 1	GLU 34
J	MET 1	ALA 43
L	SER 1	ILE 140
M	MET 1	TYR 29
U	LEU 3	ALA 143
G	ILE 30	GLY 197
H	VAL 69	ASN 229
K	VAL 52	THR 183
k	GLY 43	LEU 112

There are130 helices in PDB entry 9UH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed 310
Helix 2	AA2	A	28	32	Right-handed 310
Helix 3	AA3	A	36	45	Right-handed alpha
Helix 4	AA4	A	48	53	Right-handed alpha
Helix 5	AA5	A	55	88	Right-handed alpha
Helix 6	AA6	A	90	97	Right-handed alpha
Helix 7	AA7	A	113	118	Right-handed 310
Helix 8	AA8	A	133	141	Right-handed alpha
Helix 9	AA9	A	145	173	Right-handed alpha
Helix 10	AB1	A	177	182	Right-handed alpha
Helix 11	AB2	A	183	194	Right-handed alpha
Helix 12	AB3	A	195	210	Right-handed alpha
Helix 13	AB4	A	210	220	Right-handed alpha
Helix 14	AB5	A	223	227	Right-handed 310
Helix 15	AB6	A	230	235	Right-handed alpha
Helix 16	AB7	A	236	244	Right-handed alpha
Helix 17	AB8	A	245	249	Right-handed 310
Helix 18	AB9	A	251	256	Right-handed alpha
Helix 19	AC1	A	258	265	Right-handed 310
Helix 20	AC2	A	280	299	Right-handed alpha
Helix 21	AC3	A	311	319	Right-handed alpha
Helix 22	AC4	A	330	336	Right-handed alpha
Helix 23	AC5	A	338	364	Right-handed alpha
Helix 24	AC6	A	373	406	Right-handed alpha
Helix 25	AC7	A	415	422	Right-handed alpha
Helix 26	AC8	A	423	455	Right-handed alpha
Helix 27	AC9	A	457	461	Right-handed 310
Helix 28	AD1	A	471	484	Right-handed alpha
Helix 29	AD2	A	497	501	Right-handed 310
Helix 30	AD3	A	519	546	Right-handed alpha
Helix 31	AD4	A	555	560	Right-handed alpha
Helix 32	AD5	A	577	608	Right-handed alpha
Helix 33	AD6	A	625	630	Right-handed alpha
Helix 34	AD7	A	632	645	Right-handed alpha
Helix 35	AD8	A	645	650	Right-handed alpha
Helix 36	AD9	A	656	679	Right-handed alpha
Helix 37	AE1	A	680	698	Right-handed alpha
Helix 38	AE2	A	710	742	Right-handed alpha
Helix 39	AE3	B	7	12	Right-handed alpha
Helix 40	AE4	B	16	25	Right-handed alpha
Helix 41	AE5	B	28	32	Right-handed 310
Helix 42	AE6	B	36	70	Right-handed alpha
Helix 43	AE7	B	71	76	Right-handed alpha
Helix 44	AE8	B	95	103	Right-handed alpha
Helix 45	AE9	B	117	125	Right-handed alpha
Helix 46	AF1	B	129	154	Right-handed alpha
Helix 47	AF2	B	162	167	Right-handed alpha
Helix 48	AF3	B	168	179	Right-handed alpha
Helix 49	AF4	B	181	195	Right-handed alpha
Helix 50	AF5	B	195	201	Right-handed alpha
Helix 51	AF6	B	220	226	Right-handed alpha
Helix 52	AF7	B	227	232	Right-handed 310
Helix 53	AF8	B	267	286	Right-handed alpha
Helix 54	AF9	B	298	306	Right-handed alpha
Helix 55	AG1	B	308	312	Right-handed 310
Helix 56	AG2	B	319	327	Right-handed alpha
Helix 57	AG3	B	327	353	Right-handed alpha
Helix 58	AG4	B	362	395	Right-handed alpha
Helix 59	AG5	B	404	412	Right-handed alpha
Helix 60	AG6	B	412	444	Right-handed alpha
Helix 61	AG7	B	446	450	Right-handed 310
Helix 62	AG8	B	455	465	Right-handed alpha
Helix 63	AG9	B	474	478	Right-handed 310
Helix 64	AH1	B	481	488	Right-handed alpha
Helix 65	AH2	B	491	500	Right-handed alpha
Helix 66	AH3	B	511	538	Right-handed alpha
Helix 67	AH4	B	547	551	Right-handed 310
Helix 68	AH5	B	569	601	Right-handed alpha
Helix 69	AH6	B	603	611	Right-handed alpha
Helix 70	AH7	B	613	621	Right-handed alpha
Helix 71	AH8	B	621	626	Right-handed alpha
Helix 72	AH9	B	626	631	Right-handed alpha
Helix 73	AI1	B	641	664	Right-handed alpha
Helix 74	AI2	B	665	683	Right-handed alpha
Helix 75	AI3	B	685	689	Right-handed 310
Helix 76	AI4	B	699	731	Right-handed alpha
Helix 77	AI5	C	14	20	Right-handed alpha
Helix 78	AI6	C	43	47	Right-handed 310
Helix 79	AI7	C	51	57	Right-handed alpha
Helix 80	AI8	D	22	28	Right-handed alpha
Helix 81	AI9	D	64	79	Right-handed alpha
Helix 82	AJ1	D	122	126	Right-handed 310
Helix 83	AJ2	D	129	133	Right-handed 310
Helix 84	AJ3	E	53	55	Right-handed 310
Helix 85	AJ4	F	1	5	Right-handed 310
Helix 86	AJ5	F	11	29	Right-handed alpha
Helix 87	AJ6	F	30	32	Right-handed 310
Helix 88	AJ7	F	36	59	Right-handed alpha
Helix 89	AJ8	F	76	80	Right-handed 310
Helix 90	AJ9	F	83	110	Right-handed alpha
Helix 91	AK1	F	113	120	Right-handed alpha
Helix 92	AK2	F	122	133	Right-handed alpha
Helix 93	AK3	F	135	146	Right-handed alpha
Helix 94	AK4	F	152	156	Right-handed 310
Helix 95	AK5	I	4	16	Right-handed alpha
Helix 96	AK6	I	16	31	Right-handed alpha
Helix 97	AK7	J	2	10	Right-handed alpha
Helix 98	AK8	J	11	34	Right-handed alpha
Helix 99	AK9	L	8	10	Right-handed 310
Helix 100	AL1	L	18	23	Right-handed alpha
Helix 101	AL2	L	23	32	Right-handed alpha
Helix 102	AL3	L	41	64	Right-handed alpha
Helix 103	AL4	L	72	100	Right-handed alpha
Helix 104	AL5	L	111	139	Right-handed alpha
Helix 105	AL6	M	3	29	Right-handed alpha
Helix 106	AL7	U	23	54	Right-handed alpha
Helix 107	AL8	U	57	61	Right-handed 310
Helix 108	AL9	U	65	70	Right-handed alpha
Helix 109	AM1	U	74	98	Right-handed alpha
Helix 110	AM2	U	108	112	Right-handed 310
Helix 111	AM3	U	115	143	Right-handed alpha
Helix 112	AM4	G	43	48	Right-handed 310
Helix 113	AM5	G	52	56	Right-handed 310
Helix 114	AM6	G	61	65	Right-handed 310
Helix 115	AM7	G	67	91	Right-handed alpha
Helix 116	AM8	G	106	113	Right-handed alpha
Helix 117	AM9	G	116	134	Right-handed alpha
Helix 118	AN1	G	169	197	Right-handed alpha
Helix 119	AN2	H	97	102	Right-handed alpha
Helix 120	AN3	H	103	131	Right-handed alpha
Helix 121	AN4	H	145	151	Right-handed alpha
Helix 122	AN5	H	151	176	Right-handed alpha
Helix 123	AN6	H	196	227	Right-handed alpha
Helix 124	AN7	K	58	62	Right-handed 310
Helix 125	AN8	K	64	89	Right-handed alpha
Helix 126	AN9	K	117	128	Right-handed alpha
Helix 127	AO1	K	130	140	Right-handed alpha
Helix 128	AO2	K	162	183	Right-handed alpha
Helix 129	AO3	k	45	62	Right-handed alpha
Helix 130	AO4	k	84	109	Right-handed alpha

There are 13 sheets in PDB entry 9UH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	174	176	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	119	120	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	510	513	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	612	first strand
Strand 2	A	618	620	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	111	113	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	B	637	638	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	D	118	119	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	37	40	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	30	37	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	95	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	50	53	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	20	26	anti-parallel
Strand 4	E	6	9	anti-parallel
Strand 5	E	57	61	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	62	63	anti-parallel
Strand 3	F	69	70	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	16	17	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH4