Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UH6 entry

There are 3 chains in PDB entry 9UH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 56	GLU 728
B	ASP 293	LEU 539
F	ALA 32	HIS 292

There are 48 helices in PDB entry 9UH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	85	Right-handed alpha
Helix 2	AA2	A	95	99	Right-handed 310
Helix 3	AA3	A	100	106	Right-handed alpha
Helix 4	AA4	A	116	121	Right-handed alpha
Helix 5	AA5	A	123	135	Right-handed alpha
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	167	174	Right-handed alpha
Helix 8	AA8	A	176	187	Right-handed alpha
Helix 9	AA9	A	201	212	Right-handed alpha
Helix 10	AB1	A	234	253	Right-handed alpha
Helix 11	AB2	A	309	328	Right-handed alpha
Helix 12	AB3	A	357	364	Right-handed alpha
Helix 13	AB4	A	368	379	Right-handed alpha
Helix 14	AB5	A	385	389	Right-handed 310
Helix 15	AB6	A	458	472	Right-handed alpha
Helix 16	AB7	A	481	489	Right-handed alpha
Helix 17	AB8	A	491	497	Right-handed alpha
Helix 18	AB9	A	502	508	Right-handed alpha
Helix 19	AC1	A	518	540	Right-handed alpha
Helix 20	AC2	A	641	647	Right-handed alpha
Helix 21	AC3	A	648	650	Right-handed 310
Helix 22	AC4	B	299	303	Right-handed 310
Helix 23	AC5	B	315	324	Right-handed alpha
Helix 24	AC6	B	325	328	Right-handed 310
Helix 25	AC7	B	361	365	Right-handed 310
Helix 26	AC8	B	367	384	Right-handed alpha
Helix 27	AC9	B	400	406	Right-handed alpha
Helix 28	AD1	B	407	422	Right-handed alpha
Helix 29	AD2	B	436	442	Right-handed alpha
Helix 30	AD3	B	444	448	Right-handed 310
Helix 31	AD4	B	464	473	Right-handed alpha
Helix 32	AD5	B	478	490	Right-handed alpha
Helix 33	AD6	B	493	499	Right-handed alpha
Helix 34	AD7	B	507	509	Right-handed 310
Helix 35	AD8	B	510	522	Right-handed alpha
Helix 36	AD9	B	523	525	Right-handed 310
Helix 37	AE1	F	34	49	Right-handed alpha
Helix 38	AE2	F	51	61	Right-handed alpha
Helix 39	AE3	F	65	74	Right-handed alpha
Helix 40	AE4	F	97	101	Right-handed 310
Helix 41	AE5	F	128	132	Right-handed 310
Helix 42	AE6	F	134	152	Right-handed alpha
Helix 43	AE7	F	169	187	Right-handed alpha
Helix 44	AE8	F	205	210	Right-handed alpha
Helix 45	AE9	F	227	236	Right-handed alpha
Helix 46	AF1	F	241	246	Right-handed alpha
Helix 47	AF2	F	246	253	Right-handed alpha
Helix 48	AF3	F	263	276	Right-handed alpha

There are 13 sheets in PDB entry 9UH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	88	93	parallel
Strand 3	A	65	68	parallel
Strand 4	A	138	140	parallel
Strand 5	A	162	163	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	289	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	332	339	anti-parallel
Strand 4	A	345	351	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	297	298	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	394	401	anti-parallel
Strand 3	A	448	456	anti-parallel
Strand 4	A	429	433	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	474	476	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	565	first strand
Strand 2	A	568	576	anti-parallel
Strand 3	A	580	585	anti-parallel
Strand 4	A	588	593	anti-parallel
Strand 5	A	602	607	anti-parallel
Strand 6	A	610	619	anti-parallel
Strand 7	A	624	629	anti-parallel
Strand 8	A	632	640	anti-parallel
Strand 9	A	558	565	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	673	first strand
Strand 2	A	686	691	anti-parallel
Strand 3	A	696	700	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	710	first strand
Strand 2	A	725	727	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	350	357	anti-parallel
Strand 4	B	388	394	parallel
Strand 5	B	426	435	parallel
Strand 6	B	459	461	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	350	357	anti-parallel
Strand 4	B	388	394	parallel
Strand 5	B	426	435	parallel
Strand 6	B	451	454	parallel
Strand 7	B	504	505	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	107	114	anti-parallel
Strand 3	F	117	124	anti-parallel
Strand 4	F	155	159	parallel
Strand 5	F	192	196	parallel
Strand 6	F	213	217	parallel
Strand 7	F	259	261	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	222	224	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH6