Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UH7 entry

There are 12 chains in PDB entry 9UH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 1	U 270
B	GLY 85	VAL 1024
D	LYS 2	LEU 202
E	VAL 2	GLU 151
F	PRO 27	ASN 155
G	VAL 18	VAL 137
H	ALA 3	ASP 124
I	ALA 2	ALA 238
J	ALA 2	ARG 249
K	ARG 2	HIS 33
L	ALA 2	PRO 363
M	GLU 10	LYS 239

There are 99 helices in PDB entry 9UH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	103	111	Right-handed alpha
Helix 2	AA2	B	111	126	Right-handed alpha
Helix 3	AA3	B	127	132	Right-handed alpha
Helix 4	AA4	B	136	140	Right-handed 310
Helix 5	AA5	B	151	157	Right-handed alpha
Helix 6	AA6	B	204	210	Right-handed alpha
Helix 7	AA7	B	230	240	Right-handed alpha
Helix 8	AA8	B	258	266	Right-handed alpha
Helix 9	AA9	B	280	286	Right-handed alpha
Helix 10	AB1	B	335	347	Right-handed alpha
Helix 11	AB2	B	439	447	Right-handed alpha
Helix 12	AB3	B	464	473	Right-handed alpha
Helix 13	AB4	B	473	490	Right-handed alpha
Helix 14	AB5	B	495	499	Right-handed 310
Helix 15	AB6	B	532	542	Right-handed alpha
Helix 16	AB7	B	545	549	Right-handed 310
Helix 17	AB8	B	551	554	Right-handed 310
Helix 18	AB9	B	555	565	Right-handed alpha
Helix 19	AC1	B	568	577	Right-handed alpha
Helix 20	AC2	B	627	638	Right-handed alpha
Helix 21	AC3	B	643	655	Right-handed alpha
Helix 22	AC4	B	666	685	Right-handed alpha
Helix 23	AC5	B	694	699	Right-handed alpha
Helix 24	AC6	B	708	722	Right-handed alpha
Helix 25	AC7	B	808	820	Right-handed alpha
Helix 26	AC8	B	841	852	Right-handed alpha
Helix 27	AC9	B	879	889	Right-handed alpha
Helix 28	AD1	B	905	919	Right-handed alpha
Helix 29	AD2	B	954	959	Right-handed alpha
Helix 30	AD3	B	987	997	Right-handed alpha
Helix 31	AD4	D	10	17	Right-handed alpha
Helix 32	AD5	D	23	39	Right-handed alpha
Helix 33	AD6	D	43	53	Right-handed alpha
Helix 34	AD7	D	77	84	Right-handed alpha
Helix 35	AD8	D	90	94	Right-handed 310
Helix 36	AD9	D	95	98	Right-handed 310
Helix 37	AE1	D	99	114	Right-handed alpha
Helix 38	AE2	D	123	128	Right-handed alpha
Helix 39	AE3	D	147	151	Right-handed 310
Helix 40	AE4	D	198	200	Right-handed 310
Helix 41	AE5	E	18	23	Right-handed alpha
Helix 42	AE6	E	25	41	Right-handed alpha
Helix 43	AE7	E	42	50	Right-handed alpha
Helix 44	AE8	E	74	79	Right-handed alpha
Helix 45	AE9	E	80	84	Right-handed 310
Helix 46	AF1	E	106	126	Right-handed alpha
Helix 47	AF2	E	131	143	Right-handed alpha
Helix 48	AF3	E	144	147	Right-handed 310
Helix 49	AF4	F	45	59	Right-handed alpha
Helix 50	AF5	F	73	88	Right-handed alpha
Helix 51	AF6	G	44	58	Right-handed alpha
Helix 52	AF7	G	76	92	Right-handed alpha
Helix 53	AF8	H	36	53	Right-handed alpha
Helix 54	AF9	H	82	92	Right-handed alpha
Helix 55	AG1	I	14	29	Right-handed alpha
Helix 56	AG2	I	86	92	Right-handed alpha
Helix 57	AG3	I	94	100	Right-handed alpha
Helix 58	AG4	I	109	117	Right-handed alpha
Helix 59	AG5	I	138	149	Right-handed alpha
Helix 60	AG6	I	156	162	Right-handed alpha
Helix 61	AG7	I	162	180	Right-handed alpha
Helix 62	AG8	I	193	197	Right-handed 310
Helix 63	AG9	I	199	211	Right-handed alpha
Helix 64	AH1	I	213	220	Right-handed alpha
Helix 65	AH2	I	222	238	Right-handed alpha
Helix 66	AH3	J	14	29	Right-handed alpha
Helix 67	AH4	J	53	58	Right-handed alpha
Helix 68	AH5	J	87	92	Right-handed alpha
Helix 69	AH6	J	94	100	Right-handed alpha
Helix 70	AH7	J	109	117	Right-handed alpha
Helix 71	AH8	J	138	149	Right-handed alpha
Helix 72	AH9	J	156	162	Right-handed alpha
Helix 73	AI1	J	162	180	Right-handed alpha
Helix 74	AI2	J	199	211	Right-handed alpha
Helix 75	AI3	J	213	219	Right-handed alpha
Helix 76	AI4	J	222	238	Right-handed alpha
Helix 77	AI5	K	3	14	Right-handed alpha
Helix 78	AI6	K	18	33	Right-handed alpha
Helix 79	AI7	L	3	9	Right-handed alpha
Helix 80	AI8	L	28	36	Right-handed alpha
Helix 81	AI9	L	53	62	Right-handed alpha
Helix 82	AJ1	L	75	78	Right-handed 310
Helix 83	AJ2	L	79	86	Right-handed alpha
Helix 84	AJ3	L	120	128	Right-handed alpha
Helix 85	AJ4	L	150	156	Right-handed alpha
Helix 86	AJ5	L	159	171	Right-handed alpha
Helix 87	AJ6	L	192	197	Right-handed alpha
Helix 88	AJ7	L	236	249	Right-handed alpha
Helix 89	AJ8	L	286	299	Right-handed alpha
Helix 90	AJ9	M	10	14	Right-handed 310
Helix 91	AK1	M	32	54	Right-handed alpha
Helix 92	AK2	M	55	72	Right-handed alpha
Helix 93	AK3	M	79	97	Right-handed alpha
Helix 94	AK4	M	99	113	Right-handed alpha
Helix 95	AK5	M	128	165	Right-handed alpha
Helix 96	AK6	M	169	196	Right-handed alpha
Helix 97	AK7	M	197	212	Right-handed alpha
Helix 98	AK8	M	226	231	Right-handed alpha
Helix 99	AK9	M	231	239	Right-handed alpha

There are 15 sheets in PDB entry 9UH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	221	226	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	509	first strand
Strand 2	B	595	602	anti-parallel
Strand 3	B	617	623	anti-parallel
Strand 4	B	429	435	anti-parallel
Strand 5	B	243	246	anti-parallel
Strand 6	B	640	641	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	304	312	anti-parallel
Strand 3	B	325	331	anti-parallel
Strand 4	B	251	257	anti-parallel
Strand 5	B	421	425	anti-parallel
Strand 6	B	412	414	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	855	863	parallel
Strand 3	B	1016	1021	anti-parallel
Strand 4	B	1004	1008	anti-parallel
Strand 5	B	874	876	anti-parallel
Strand 6	B	963	973	anti-parallel
Strand 7	B	978	986	anti-parallel
Strand 8	B	855	863	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	178	first strand
Strand 2	D	164	168	anti-parallel
Strand 3	D	154	160	anti-parallel
Strand 4	D	139	145	anti-parallel
Strand 5	D	182	187	anti-parallel
Strand 6	D	191	196	anti-parallel
Strand 7	J	242	246	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	64	68	anti-parallel
Strand 3	E	8	15	anti-parallel
Strand 4	E	96	104	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	64	70	parallel
Strand 3	F	126	140	anti-parallel
Strand 4	F	92	106	anti-parallel
Strand 5	F	151	152	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	96	113	anti-parallel
Strand 3	G	121	136	anti-parallel
Strand 4	G	68	74	anti-parallel
Strand 5	G	36	38	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	L	14	21	anti-parallel
Strand 3	L	348	354	anti-parallel
Strand 4	L	338	343	anti-parallel
Strand 5	L	310	316	anti-parallel
Strand 6	L	39	47	anti-parallel
Strand 7	L	270	285	anti-parallel
Strand 8	L	208	220	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	67	first strand
Strand 2	H	72	78	anti-parallel
Strand 3	H	19	28	anti-parallel
Strand 4	H	100	108	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	10	first strand
Strand 2	I	32	39	parallel
Strand 3	I	72	81	parallel
Strand 4	I	102	107	parallel
Strand 5	I	124	126	parallel
Strand 6	I	151	155	parallel
Strand 7	I	185	188	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	32	35	parallel
Strand 3	J	72	80	parallel
Strand 4	J	38	40	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	32	35	parallel
Strand 3	J	72	80	parallel
Strand 4	J	102	106	parallel
Strand 5	J	124	126	parallel
Strand 6	J	152	155	parallel
Strand 7	J	185	188	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	132	133	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	114	119	anti-parallel
Strand 4	L	106	109	anti-parallel
Strand 5	L	92	96	anti-parallel
Strand 6	L	176	183	anti-parallel
Strand 7	L	66	73	anti-parallel
Strand 8	L	202	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	25	29	first strand
Strand 2	M	123	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH7