Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UH9 entry

There are 13 chains in PDB entry 9UH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 1	U 270
B	GLY 85	VAL 1024
C	PRO 28	SER 204
D	LYS 2	LEU 202
E	VAL 2	GLU 150
F	PRO 27	ASN 155
G	VAL 18	VAL 137
H	ALA 3	ASP 124
I	ALA 2	ALA 238
J	ALA 2	ARG 249
K	ARG 2	SER 119
L	ALA 2	PRO 363
M	GLU 10	LYS 239

There are108 helices in PDB entry 9UH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	103	111	Right-handed alpha
Helix 2	AA2	B	111	126	Right-handed alpha
Helix 3	AA3	B	127	132	Right-handed alpha
Helix 4	AA4	B	151	157	Right-handed alpha
Helix 5	AA5	B	204	212	Right-handed alpha
Helix 6	AA6	B	230	240	Right-handed alpha
Helix 7	AA7	B	258	266	Right-handed alpha
Helix 8	AA8	B	280	285	Right-handed alpha
Helix 9	AA9	B	332	334	Right-handed 310
Helix 10	AB1	B	335	347	Right-handed alpha
Helix 11	AB2	B	439	447	Right-handed alpha
Helix 12	AB3	B	464	473	Right-handed alpha
Helix 13	AB4	B	473	490	Right-handed alpha
Helix 14	AB5	B	532	542	Right-handed alpha
Helix 15	AB6	B	551	554	Right-handed 310
Helix 16	AB7	B	555	565	Right-handed alpha
Helix 17	AB8	B	568	577	Right-handed alpha
Helix 18	AB9	B	630	638	Right-handed alpha
Helix 19	AC1	B	643	655	Right-handed alpha
Helix 20	AC2	B	666	686	Right-handed alpha
Helix 21	AC3	B	694	699	Right-handed alpha
Helix 22	AC4	B	708	722	Right-handed alpha
Helix 23	AC5	B	808	820	Right-handed alpha
Helix 24	AC6	B	841	852	Right-handed alpha
Helix 25	AC7	B	879	889	Right-handed alpha
Helix 26	AC8	B	902	904	Right-handed 310
Helix 27	AC9	B	905	919	Right-handed alpha
Helix 28	AD1	B	954	959	Right-handed alpha
Helix 29	AD2	B	987	997	Right-handed alpha
Helix 30	AD3	C	38	56	Right-handed alpha
Helix 31	AD4	C	106	112	Right-handed alpha
Helix 32	AD5	C	116	126	Right-handed alpha
Helix 33	AD6	C	141	146	Right-handed alpha
Helix 34	AD7	C	146	154	Right-handed alpha
Helix 35	AD8	C	164	173	Right-handed alpha
Helix 36	AD9	C	189	200	Right-handed alpha
Helix 37	AE1	D	3	7	Right-handed alpha
Helix 38	AE2	D	10	17	Right-handed alpha
Helix 39	AE3	D	23	39	Right-handed alpha
Helix 40	AE4	D	43	53	Right-handed alpha
Helix 41	AE5	D	77	84	Right-handed alpha
Helix 42	AE6	D	96	98	Right-handed 310
Helix 43	AE7	D	99	114	Right-handed alpha
Helix 44	AE8	D	122	130	Right-handed alpha
Helix 45	AE9	D	147	151	Right-handed 310
Helix 46	AF1	E	18	23	Right-handed alpha
Helix 47	AF2	E	25	41	Right-handed alpha
Helix 48	AF3	E	42	50	Right-handed alpha
Helix 49	AF4	E	74	81	Right-handed alpha
Helix 50	AF5	E	106	126	Right-handed alpha
Helix 51	AF6	E	131	139	Right-handed alpha
Helix 52	AF7	E	142	147	Right-handed alpha
Helix 53	AF8	F	45	58	Right-handed alpha
Helix 54	AF9	F	73	88	Right-handed alpha
Helix 55	AG1	G	44	58	Right-handed alpha
Helix 56	AG2	G	76	92	Right-handed alpha
Helix 57	AG3	H	36	53	Right-handed alpha
Helix 58	AG4	H	53	58	Right-handed alpha
Helix 59	AG5	H	82	92	Right-handed alpha
Helix 60	AG6	H	110	116	Right-handed alpha
Helix 61	AG7	I	14	29	Right-handed alpha
Helix 62	AG8	I	53	58	Right-handed alpha
Helix 63	AG9	I	86	92	Right-handed alpha
Helix 64	AH1	I	94	100	Right-handed alpha
Helix 65	AH2	I	109	117	Right-handed alpha
Helix 66	AH3	I	138	149	Right-handed alpha
Helix 67	AH4	I	156	162	Right-handed alpha
Helix 68	AH5	I	163	180	Right-handed alpha
Helix 69	AH6	I	199	211	Right-handed alpha
Helix 70	AH7	I	213	219	Right-handed alpha
Helix 71	AH8	I	223	238	Right-handed alpha
Helix 72	AH9	J	14	29	Right-handed alpha
Helix 73	AI1	J	53	58	Right-handed alpha
Helix 74	AI2	J	86	92	Right-handed alpha
Helix 75	AI3	J	94	100	Right-handed alpha
Helix 76	AI4	J	109	117	Right-handed alpha
Helix 77	AI5	J	138	149	Right-handed alpha
Helix 78	AI6	J	157	162	Right-handed alpha
Helix 79	AI7	J	162	180	Right-handed alpha
Helix 80	AI8	J	193	197	Right-handed 310
Helix 81	AI9	J	199	211	Right-handed alpha
Helix 82	AJ1	J	213	219	Right-handed alpha
Helix 83	AJ2	J	222	238	Right-handed alpha
Helix 84	AJ3	K	3	14	Right-handed alpha
Helix 85	AJ4	K	18	33	Right-handed alpha
Helix 86	AJ5	K	66	79	Right-handed alpha
Helix 87	AJ6	K	83	95	Right-handed alpha
Helix 88	AJ7	L	3	8	Right-handed alpha
Helix 89	AJ8	L	28	36	Right-handed alpha
Helix 90	AJ9	L	53	62	Right-handed alpha
Helix 91	AK1	L	75	78	Right-handed 310
Helix 92	AK2	L	79	86	Right-handed alpha
Helix 93	AK3	L	121	128	Right-handed alpha
Helix 94	AK4	L	150	156	Right-handed alpha
Helix 95	AK5	L	159	171	Right-handed alpha
Helix 96	AK6	L	192	197	Right-handed alpha
Helix 97	AK7	L	236	248	Right-handed alpha
Helix 98	AK8	L	286	299	Right-handed alpha
Helix 99	AK9	M	10	14	Right-handed 310
Helix 100	AL1	M	32	54	Right-handed alpha
Helix 101	AL2	M	55	72	Right-handed alpha
Helix 102	AL3	M	79	98	Right-handed alpha
Helix 103	AL4	M	99	113	Right-handed alpha
Helix 104	AL5	M	128	164	Right-handed alpha
Helix 105	AL6	M	169	196	Right-handed alpha
Helix 106	AL7	M	197	212	Right-handed alpha
Helix 107	AL8	M	225	231	Right-handed alpha
Helix 108	AL9	M	231	239	Right-handed alpha

There are 18 sheets in PDB entry 9UH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	222	223	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	509	first strand
Strand 2	B	595	602	anti-parallel
Strand 3	B	617	623	anti-parallel
Strand 4	B	429	435	anti-parallel
Strand 5	B	243	246	anti-parallel
Strand 6	B	640	641	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	304	312	anti-parallel
Strand 3	B	325	331	anti-parallel
Strand 4	B	251	257	anti-parallel
Strand 5	B	421	425	anti-parallel
Strand 6	B	412	414	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	855	863	parallel
Strand 3	B	1016	1021	anti-parallel
Strand 4	B	1004	1008	anti-parallel
Strand 5	B	874	876	anti-parallel
Strand 6	B	963	972	anti-parallel
Strand 7	B	979	986	anti-parallel
Strand 8	B	855	863	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	103	105	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	179	182	anti-parallel
Strand 3	C	131	135	anti-parallel
Strand 4	C	159	161	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	178	first strand
Strand 2	D	164	169	anti-parallel
Strand 3	D	154	160	anti-parallel
Strand 4	D	139	145	anti-parallel
Strand 5	D	182	187	anti-parallel
Strand 6	D	191	196	anti-parallel
Strand 7	J	242	246	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	64	68	anti-parallel
Strand 3	E	8	15	anti-parallel
Strand 4	E	96	104	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	93	94	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	64	70	parallel
Strand 3	F	126	140	anti-parallel
Strand 4	F	92	106	anti-parallel
Strand 5	F	151	152	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	96	113	anti-parallel
Strand 3	G	121	136	anti-parallel
Strand 4	G	68	74	anti-parallel
Strand 5	G	36	38	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	14	first strand
Strand 2	L	14	21	anti-parallel
Strand 3	L	348	354	anti-parallel
Strand 4	L	338	343	anti-parallel
Strand 5	L	310	315	anti-parallel
Strand 6	L	39	47	anti-parallel
Strand 7	L	270	285	anti-parallel
Strand 8	L	208	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	67	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	20	28	anti-parallel
Strand 4	H	100	108	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	32	39	parallel
Strand 3	I	72	81	parallel
Strand 4	I	102	107	parallel
Strand 5	I	124	125	parallel
Strand 6	I	151	152	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	10	first strand
Strand 2	J	32	39	parallel
Strand 3	J	72	81	parallel
Strand 4	J	102	107	parallel
Strand 5	J	124	126	parallel
Strand 6	J	151	155	parallel
Strand 7	J	185	188	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	60	first strand
Strand 2	K	99	104	anti-parallel
Strand 3	K	109	114	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	132	133	first strand
Strand 2	L	143	149	anti-parallel
Strand 3	L	114	120	anti-parallel
Strand 4	L	106	109	anti-parallel
Strand 5	L	92	96	anti-parallel
Strand 6	L	176	183	anti-parallel
Strand 7	L	66	73	anti-parallel
Strand 8	L	202	205	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	25	29	first strand
Strand 2	M	123	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UH9