Analysis of interatomic Contacts of Structural Units in PDB entry:
9UIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UIE entry

There are 3 chains in PDB entry 9UIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 2	G 32
B	SER 3	TYR 912
C	SER 3	TYR 912

There are 70 helices in PDB entry 9UIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	31	Right-handed alpha
Helix 2	AA2	B	34	54	Right-handed alpha
Helix 3	AA3	B	70	75	Right-handed alpha
Helix 4	AA4	B	77	88	Right-handed alpha
Helix 5	AA5	B	91	94	Right-handed 310
Helix 6	AA6	B	142	159	Right-handed alpha
Helix 7	AA7	B	180	192	Right-handed alpha
Helix 8	AA8	B	219	239	Right-handed alpha
Helix 9	AA9	B	263	277	Right-handed alpha
Helix 10	AB1	B	340	349	Right-handed alpha
Helix 11	AB2	B	380	395	Right-handed alpha
Helix 12	AB3	B	406	417	Right-handed alpha
Helix 13	AB4	B	419	429	Right-handed alpha
Helix 14	AB5	B	441	446	Right-handed alpha
Helix 15	AB6	B	480	499	Right-handed alpha
Helix 16	AB7	B	530	534	Right-handed 310
Helix 17	AB8	B	537	554	Right-handed alpha
Helix 18	AB9	B	557	581	Right-handed alpha
Helix 19	AC1	B	598	615	Right-handed alpha
Helix 20	AC2	B	617	619	Right-handed 310
Helix 21	AC3	B	627	638	Right-handed alpha
Helix 22	AC4	B	645	651	Right-handed alpha
Helix 23	AC5	B	663	667	Right-handed 310
Helix 24	AC6	B	673	683	Right-handed alpha
Helix 25	AC7	B	704	708	Right-handed 310
Helix 26	AC8	B	718	722	Right-handed 310
Helix 27	AC9	B	735	752	Right-handed alpha
Helix 28	AD1	B	758	763	Right-handed alpha
Helix 29	AD2	B	766	778	Right-handed alpha
Helix 30	AD3	B	790	808	Right-handed alpha
Helix 31	AD4	B	811	813	Right-handed 310
Helix 32	AD5	B	821	823	Right-handed 310
Helix 33	AD6	B	824	840	Right-handed alpha
Helix 34	AD7	B	889	897	Right-handed alpha
Helix 35	AD8	C	25	32	Right-handed alpha
Helix 36	AD9	C	34	54	Right-handed alpha
Helix 37	AE1	C	70	75	Right-handed alpha
Helix 38	AE2	C	77	88	Right-handed alpha
Helix 39	AE3	C	142	159	Right-handed alpha
Helix 40	AE4	C	161	165	Right-handed 310
Helix 41	AE5	C	180	192	Right-handed alpha
Helix 42	AE6	C	219	238	Right-handed alpha
Helix 43	AE7	C	263	277	Right-handed alpha
Helix 44	AE8	C	340	350	Right-handed alpha
Helix 45	AE9	C	380	395	Right-handed alpha
Helix 46	AF1	C	406	417	Right-handed alpha
Helix 47	AF2	C	419	429	Right-handed alpha
Helix 48	AF3	C	441	446	Right-handed alpha
Helix 49	AF4	C	480	499	Right-handed alpha
Helix 50	AF5	C	530	534	Right-handed 310
Helix 51	AF6	C	537	554	Right-handed alpha
Helix 52	AF7	C	557	581	Right-handed alpha
Helix 53	AF8	C	582	585	Right-handed 310
Helix 54	AF9	C	598	615	Right-handed alpha
Helix 55	AG1	C	617	619	Right-handed 310
Helix 56	AG2	C	627	638	Right-handed alpha
Helix 57	AG3	C	645	651	Right-handed alpha
Helix 58	AG4	C	663	667	Right-handed 310
Helix 59	AG5	C	673	683	Right-handed alpha
Helix 60	AG6	C	704	708	Right-handed 310
Helix 61	AG7	C	718	722	Right-handed 310
Helix 62	AG8	C	735	752	Right-handed alpha
Helix 63	AG9	C	760	765	Right-handed 310
Helix 64	AH1	C	766	778	Right-handed alpha
Helix 65	AH2	C	790	808	Right-handed alpha
Helix 66	AH3	C	811	813	Right-handed 310
Helix 67	AH4	C	821	823	Right-handed 310
Helix 68	AH5	C	824	840	Right-handed alpha
Helix 69	AH6	C	866	869	Right-handed 310
Helix 70	AH7	C	889	897	Right-handed alpha

There are 18 sheets in PDB entry 9UIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	22	first strand
Strand 2	B	58	64	parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	96	101	anti-parallel
Strand 5	C	177	179	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	137	140	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	104	109	anti-parallel
Strand 4	C	58	64	anti-parallel
Strand 5	C	16	22	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	292	301	parallel
Strand 3	B	304	314	anti-parallel
Strand 4	B	241	245	anti-parallel
Strand 5	B	210	213	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	292	301	parallel
Strand 3	B	304	314	anti-parallel
Strand 4	B	257	258	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	320	321	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	335	338	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	434	439	parallel
Strand 3	B	454	462	anti-parallel
Strand 4	B	467	473	anti-parallel
Strand 5	B	508	514	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	621	625	parallel
Strand 3	B	658	661	parallel
Strand 4	B	699	703	parallel
Strand 5	B	588	593	parallel
Strand 6	B	725	728	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	789	first strand
Strand 2	B	898	907	parallel
Strand 3	B	873	880	parallel
Strand 4	B	815	819	parallel
Strand 5	B	860	864	parallel
Strand 6	B	849	850	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	137	140	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	292	300	parallel
Strand 3	C	305	314	anti-parallel
Strand 4	C	241	245	anti-parallel
Strand 5	C	210	213	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	292	300	parallel
Strand 3	C	305	314	anti-parallel
Strand 4	C	257	258	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	320	321	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	336	338	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	405	first strand
Strand 2	C	434	439	parallel
Strand 3	C	454	462	anti-parallel
Strand 4	C	467	473	anti-parallel
Strand 5	C	508	514	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	644	first strand
Strand 2	C	621	625	parallel
Strand 3	C	658	661	parallel
Strand 4	C	699	703	parallel
Strand 5	C	588	593	parallel
Strand 6	C	725	728	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	782	789	first strand
Strand 2	C	898	907	parallel
Strand 3	C	873	880	parallel
Strand 4	C	815	819	parallel
Strand 5	C	860	864	parallel
Strand 6	C	849	850	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UIE