Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UJ3 entry

There are 2 chains in PDB entry 9UJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31ALA 383
B
 PRO 31ALA 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9UJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 40Right-handed alpha
Helix 2
AA2
A
62 73Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
96 109Right-handed alpha
Helix 5
AA5
A
122 126Right-handed 310
Helix 6
AA6
A
127 132Right-handed alpha
Helix 7
AA7
A
139 158Right-handed alpha
Helix 8
AA8
A
181 188Right-handed alpha
Helix 9
AA9
A
188 204Right-handed alpha
Helix 10
AB1
A
220 239Right-handed alpha
Helix 11
AB2
A
253 257Right-handed 310
Helix 12
AB3
A
260 262Right-handed 310
Helix 13
AB4
A
263 280Right-handed alpha
Helix 14
AB5
A
299 319Right-handed alpha
Helix 15
AB6
A
333 341Right-handed 310
Helix 16
AB7
A
342 346Right-handed 310
Helix 17
AB8
A
365 378Right-handed alpha
Helix 18
AB9
B
32 40Right-handed alpha
Helix 19
AC1
B
62 73Right-handed alpha
Helix 20
AC2
B
83 88Right-handed alpha
Helix 21
AC3
B
96 109Right-handed alpha
Helix 22
AC4
B
122 126Right-handed 310
Helix 23
AC5
B
127 132Right-handed alpha
Helix 24
AC6
B
139 158Right-handed alpha
Helix 25
AC7
B
181 188Right-handed alpha
Helix 26
AC8
B
188 204Right-handed alpha
Helix 27
AC9
B
220 239Right-handed alpha
Helix 28
AD1
B
253 257Right-handed 310
Helix 29
AD2
B
260 262Right-handed 310
Helix 30
AD3
B
263 280Right-handed alpha
Helix 31
AD4
B
299 319Right-handed alpha
Helix 32
AD5
B
333 346Right-handed 310
Helix 33
AD6
B
365 378Right-handed alpha
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There are 2 sheets in PDB entry 9UJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
283 291parallel
Strand 3
A
324 329parallel
Strand 4
A
43 48parallel
Strand 5
A
75 78parallel
Strand 6
A
112 120parallel
Strand 7
A
163 168parallel
Strand 8
A
208 213parallel
Strand 9
A
245 248parallel
Strand 10
A
283 291parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
283 291parallel
Strand 3
B
324 329parallel
Strand 4
B
43 48parallel
Strand 5
B
75 78parallel
Strand 6
B
112 120parallel
Strand 7
B
163 168parallel
Strand 8
B
208 213parallel
Strand 9
B
245 248parallel
Strand 10
B
283 291parallel
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