Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UJ6 entry

There are 2 chains in PDB entry 9UJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24ASP 291
B
 ASN 24ASP 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 9UJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 40Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
144 156Right-handed alpha
Helix 8
AA8
A
168 172Right-handed 310
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
201 214Right-handed alpha
Helix 11
AB2
A
221 226Right-handed 310
Helix 12
AB3
A
275 291Right-handed alpha
Helix 13
AB4
B
25 40Right-handed alpha
Helix 14
AB5
B
69 71Right-handed 310
Helix 15
AB6
B
72 86Right-handed alpha
Helix 16
AB7
B
108 113Right-handed 310
Helix 17
AB8
B
119 129Right-handed alpha
Helix 18
AB9
B
131 141Right-handed alpha
Helix 19
AC1
B
143 155Right-handed alpha
Helix 20
AC2
B
182 195Right-handed alpha
Helix 21
AC3
B
200 213Right-handed alpha
Helix 22
AC4
B
220 225Right-handed 310
Helix 23
AC5
B
275 290Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9UJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
259 267anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
231 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
42 50anti-parallel
Strand 3
B
259 267anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
230 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il