Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UJD entry

There are 5 chains in PDB entry 9UJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 21	ILE 199
A	ASN 201	VAL 344
B	ALA 22	TYR 342
C	GLY 21	ASP 343
D	ARG 24	ASP 343

There are 32 helices in PDB entry 9UJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	74	Right-handed alpha
Helix 2	AA2	A	91	106	Right-handed alpha
Helix 3	AA3	A	113	129	Right-handed alpha
Helix 4	AA4	A	171	178	Right-handed alpha
Helix 5	AA5	A	204	218	Right-handed alpha
Helix 6	AA6	A	257	270	Right-handed alpha
Helix 7	AA7	A	280	287	Right-handed alpha
Helix 8	AA8	A	316	332	Right-handed alpha
Helix 9	AA9	B	69	74	Right-handed alpha
Helix 10	AB1	B	91	106	Right-handed alpha
Helix 11	AB2	B	113	129	Right-handed alpha
Helix 12	AB3	B	171	178	Right-handed alpha
Helix 13	AB4	B	204	217	Right-handed alpha
Helix 14	AB5	B	257	270	Right-handed alpha
Helix 15	AB6	B	280	287	Right-handed alpha
Helix 16	AB7	B	316	332	Right-handed alpha
Helix 17	AB8	C	59	62	Right-handed 310
Helix 18	AB9	C	91	106	Right-handed alpha
Helix 19	AC1	C	113	129	Right-handed alpha
Helix 20	AC2	C	171	178	Right-handed alpha
Helix 21	AC3	C	204	217	Right-handed alpha
Helix 22	AC4	C	257	270	Right-handed alpha
Helix 23	AC5	C	280	287	Right-handed alpha
Helix 24	AC6	C	316	332	Right-handed alpha
Helix 25	AC7	D	69	74	Right-handed alpha
Helix 26	AC8	D	91	106	Right-handed alpha
Helix 27	AC9	D	113	129	Right-handed alpha
Helix 28	AD1	D	171	178	Right-handed alpha
Helix 29	AD2	D	204	217	Right-handed alpha
Helix 30	AD3	D	257	271	Right-handed alpha
Helix 31	AD4	D	280	287	Right-handed alpha
Helix 32	AD5	D	316	332	Right-handed alpha

There are 14 sheets in PDB entry 9UJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	158	165	anti-parallel
Strand 4	A	133	140	anti-parallel
Strand 5	A	77	85	anti-parallel
Strand 6	A	88	90	anti-parallel
Strand 7	A	337	339	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	B	64	66	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	179	182	parallel
Strand 3	A	298	305	parallel
Strand 4	A	289	294	anti-parallel
Strand 5	A	238	243	anti-parallel
Strand 6	A	246	250	anti-parallel
Strand 7	A	273	277	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	179	182	parallel
Strand 3	A	298	305	parallel
Strand 4	A	308	309	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	50	53	anti-parallel
Strand 3	B	156	165	anti-parallel
Strand 4	B	133	143	anti-parallel
Strand 5	B	77	85	anti-parallel
Strand 6	B	88	90	anti-parallel
Strand 7	B	337	339	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	179	182	parallel
Strand 3	B	298	305	parallel
Strand 4	B	289	294	anti-parallel
Strand 5	B	238	243	anti-parallel
Strand 6	B	246	250	anti-parallel
Strand 7	B	273	277	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	179	182	parallel
Strand 3	B	298	305	parallel
Strand 4	B	308	309	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	50	53	anti-parallel
Strand 3	C	156	165	anti-parallel
Strand 4	C	133	143	anti-parallel
Strand 5	C	77	85	anti-parallel
Strand 6	C	88	90	anti-parallel
Strand 7	C	337	339	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	D	64	66	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	179	182	parallel
Strand 3	C	298	305	parallel
Strand 4	C	289	294	anti-parallel
Strand 5	C	238	243	anti-parallel
Strand 6	C	246	250	anti-parallel
Strand 7	C	273	277	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	179	182	parallel
Strand 3	C	298	305	parallel
Strand 4	C	308	309	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	50	53	anti-parallel
Strand 3	D	156	165	anti-parallel
Strand 4	D	133	143	anti-parallel
Strand 5	D	77	85	anti-parallel
Strand 6	D	88	90	anti-parallel
Strand 7	D	337	339	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	179	182	parallel
Strand 3	D	298	305	parallel
Strand 4	D	289	294	anti-parallel
Strand 5	D	238	243	anti-parallel
Strand 6	D	246	250	anti-parallel
Strand 7	D	274	277	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	179	182	parallel
Strand 3	D	298	305	parallel
Strand 4	D	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJD