Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UJE entry

There are 3 chains in PDB entry 9UJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 24	LEU 1142
B	THR 24	LEU 1142
C	THR 24	LEU 1142

There are 57 helices in PDB entry 9UJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	302	Right-handed alpha
Helix 2	AA2	A	335	341	Right-handed alpha
Helix 3	AA3	A	362	369	Right-handed 310
Helix 4	AA4	A	384	387	Right-handed 310
Helix 5	AA5	A	403	405	Right-handed 310
Helix 6	AA6	A	416	420	Right-handed alpha
Helix 7	AA7	A	613	623	Right-handed alpha
Helix 8	AA8	A	734	740	Right-handed alpha
Helix 9	AA9	A	743	751	Right-handed alpha
Helix 10	AB1	A	752	754	Right-handed 310
Helix 11	AB2	A	755	780	Right-handed alpha
Helix 12	AB3	A	813	823	Right-handed alpha
Helix 13	AB4	A	863	882	Right-handed alpha
Helix 14	AB5	A	883	888	Right-handed alpha
Helix 15	AB6	A	894	904	Right-handed alpha
Helix 16	AB7	A	905	907	Right-handed 310
Helix 17	AB8	A	910	916	Right-handed alpha
Helix 18	AB9	A	916	938	Right-handed alpha
Helix 19	AC1	A	942	962	Right-handed alpha
Helix 20	AC2	A	963	965	Right-handed 310
Helix 21	AC3	A	973	981	Right-handed alpha
Helix 22	AC4	A	982	1030	Right-handed alpha
Helix 23	AC5	B	292	302	Right-handed alpha
Helix 24	AC6	B	613	623	Right-handed alpha
Helix 25	AC7	B	734	740	Right-handed alpha
Helix 26	AC8	B	743	750	Right-handed alpha
Helix 27	AC9	B	751	754	Right-handed 310
Helix 28	AD1	B	755	780	Right-handed alpha
Helix 29	AD2	B	813	823	Right-handed alpha
Helix 30	AD3	B	863	882	Right-handed alpha
Helix 31	AD4	B	894	905	Right-handed alpha
Helix 32	AD5	B	909	916	Right-handed alpha
Helix 33	AD6	B	916	938	Right-handed alpha
Helix 34	AD7	B	942	962	Right-handed alpha
Helix 35	AD8	B	963	965	Right-handed 310
Helix 36	AD9	B	973	979	Right-handed alpha
Helix 37	AE1	B	982	1030	Right-handed alpha
Helix 38	AE2	B	1113	1115	Right-handed 310
Helix 39	AE3	C	292	302	Right-handed alpha
Helix 40	AE4	C	613	624	Right-handed alpha
Helix 41	AE5	C	734	740	Right-handed alpha
Helix 42	AE6	C	743	751	Right-handed alpha
Helix 43	AE7	C	752	754	Right-handed 310
Helix 44	AE8	C	755	780	Right-handed alpha
Helix 45	AE9	C	813	823	Right-handed alpha
Helix 46	AF1	C	846	853	Right-handed alpha
Helix 47	AF2	C	863	882	Right-handed alpha
Helix 48	AF3	C	883	887	Right-handed 310
Helix 49	AF4	C	894	905	Right-handed alpha
Helix 50	AF5	C	909	916	Right-handed alpha
Helix 51	AF6	C	916	938	Right-handed alpha
Helix 52	AF7	C	939	941	Right-handed 310
Helix 53	AF8	C	942	962	Right-handed alpha
Helix 54	AF9	C	963	965	Right-handed 310
Helix 55	AG1	C	973	981	Right-handed alpha
Helix 56	AG2	C	982	1030	Right-handed alpha
Helix 57	AG3	C	1136	1142	Right-handed alpha

There are 36 sheets in PDB entry 9UJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	263	267	anti-parallel
Strand 4	A	88	94	anti-parallel
Strand 5	A	188	196	anti-parallel
Strand 6	A	199	207	anti-parallel
Strand 7	A	220	227	anti-parallel
Strand 8	A	35	36	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	562	564	parallel
Strand 3	B	570	574	anti-parallel
Strand 4	B	581	585	anti-parallel
Strand 5	B	543	551	anti-parallel
Strand 6	B	535	540	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	54	first strand
Strand 2	A	269	277	anti-parallel
Strand 3	A	283	288	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	235	238	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	125	131	anti-parallel
Strand 6	A	163	163	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	235	238	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	125	131	anti-parallel
Strand 6	A	169	169	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	317	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	639	641	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	535	540	parallel
Strand 3	A	543	551	anti-parallel
Strand 4	A	581	585	anti-parallel
Strand 5	A	570	574	anti-parallel
Strand 6	A	563	564	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	392	401	anti-parallel
Strand 3	A	504	513	anti-parallel
Strand 4	A	429	435	anti-parallel
Strand 5	A	377	378	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	521	522	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	657	first strand
Strand 2	A	688	694	parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	661	662	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	701	first strand
Strand 2	C	785	787	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	725	first strand
Strand 2	A	1056	1074	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	725	first strand
Strand 2	A	1056	1074	anti-parallel
Strand 3	A	1091	1094	anti-parallel
Strand 4	A	1099	1102	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	856	858	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	787	first strand
Strand 2	B	699	701	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1084	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	61	63	anti-parallel
Strand 3	B	264	267	anti-parallel
Strand 4	B	89	94	anti-parallel
Strand 5	B	188	194	anti-parallel
Strand 6	B	200	207	anti-parallel
Strand 7	B	222	227	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	C	562	564	parallel
Strand 3	C	570	574	anti-parallel
Strand 4	C	581	585	anti-parallel
Strand 5	C	543	551	anti-parallel
Strand 6	C	536	540	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	54	first strand
Strand 2	B	269	277	anti-parallel
Strand 3	B	283	288	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	103	106	anti-parallel
Strand 4	B	115	119	anti-parallel
Strand 5	B	126	130	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	317	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	641	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	688	693	parallel
Strand 3	B	667	672	anti-parallel
Strand 4	B	661	664	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	1071	1074	anti-parallel
Strand 3	B	1091	1094	anti-parallel
Strand 4	B	1099	1103	anti-parallel
Strand 5	B	1106	1110	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	725	first strand
Strand 2	B	1056	1066	anti-parallel
Strand 3	B	1044	1053	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	785	787	first strand
Strand 2	C	699	701	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1119	first strand
Strand 2	B	1084	1087	anti-parallel
Strand 3	B	1077	1079	anti-parallel
Strand 4	B	1129	1131	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	220	227	parallel
Strand 3	C	199	207	anti-parallel
Strand 4	C	188	196	anti-parallel
Strand 5	C	89	94	anti-parallel
Strand 6	C	263	267	anti-parallel
Strand 7	C	62	64	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	54	first strand
Strand 2	C	269	277	anti-parallel
Strand 3	C	283	288	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	102	106	anti-parallel
Strand 3	C	235	239	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	317	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	639	641	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	657	first strand
Strand 2	C	688	694	parallel
Strand 3	C	667	672	anti-parallel
Strand 4	C	661	664	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1044	1053	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1119	first strand
Strand 2	C	1084	1087	anti-parallel
Strand 3	C	1077	1079	anti-parallel
Strand 4	C	1129	1131	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJE