Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UJI entry

There are 8 chains in PDB entry 9UJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 50	GLN 178
B	ARG 50	LEU 179
C	ARG 50	GLN 178
D	ARG 50	LEU 179
E	ARG 50	VAL 176
F	ARG 50	GLN 178
G	ARG 50	GLN 178
H	ARG 50	LEU 179

There are 48 helices in PDB entry 9UJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	73	Right-handed alpha
Helix 2	AA2	A	96	104	Right-handed alpha
Helix 3	AA3	A	104	113	Right-handed alpha
Helix 4	AA4	A	129	143	Right-handed alpha
Helix 5	AA5	A	151	162	Right-handed alpha
Helix 6	AA6	A	164	177	Right-handed alpha
Helix 7	AA7	B	58	73	Right-handed alpha
Helix 8	AA8	B	96	102	Right-handed alpha
Helix 9	AA9	B	104	113	Right-handed alpha
Helix 10	AB1	B	129	143	Right-handed alpha
Helix 11	AB2	B	151	163	Right-handed alpha
Helix 12	AB3	B	164	177	Right-handed alpha
Helix 13	AB4	C	58	73	Right-handed alpha
Helix 14	AB5	C	96	104	Right-handed alpha
Helix 15	AB6	C	104	113	Right-handed alpha
Helix 16	AB7	C	129	143	Right-handed alpha
Helix 17	AB8	C	151	162	Right-handed alpha
Helix 18	AB9	C	164	177	Right-handed alpha
Helix 19	AC1	D	58	73	Right-handed alpha
Helix 20	AC2	D	96	104	Right-handed alpha
Helix 21	AC3	D	104	113	Right-handed alpha
Helix 22	AC4	D	129	143	Right-handed alpha
Helix 23	AC5	D	151	162	Right-handed alpha
Helix 24	AC6	D	164	177	Right-handed alpha
Helix 25	AC7	E	58	73	Right-handed alpha
Helix 26	AC8	E	96	104	Right-handed alpha
Helix 27	AC9	E	104	113	Right-handed alpha
Helix 28	AD1	E	129	143	Right-handed alpha
Helix 29	AD2	E	151	162	Right-handed alpha
Helix 30	AD3	E	164	176	Right-handed alpha
Helix 31	AD4	F	58	73	Right-handed alpha
Helix 32	AD5	F	96	102	Right-handed alpha
Helix 33	AD6	F	104	113	Right-handed alpha
Helix 34	AD7	F	129	143	Right-handed alpha
Helix 35	AD8	F	151	163	Right-handed alpha
Helix 36	AD9	F	164	177	Right-handed alpha
Helix 37	AE1	G	58	73	Right-handed alpha
Helix 38	AE2	G	96	102	Right-handed alpha
Helix 39	AE3	G	104	113	Right-handed alpha
Helix 40	AE4	G	129	143	Right-handed alpha
Helix 41	AE5	G	151	162	Right-handed alpha
Helix 42	AE6	G	164	177	Right-handed alpha
Helix 43	AE7	H	58	73	Right-handed alpha
Helix 44	AE8	H	96	102	Right-handed alpha
Helix 45	AE9	H	104	113	Right-handed alpha
Helix 46	AF1	H	129	143	Right-handed alpha
Helix 47	AF2	H	151	162	Right-handed alpha
Helix 48	AF3	H	164	177	Right-handed alpha

There are 16 sheets in PDB entry 9UJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	B	144	148	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	79	85	anti-parallel
Strand 3	A	121	126	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	B	51	55	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	79	85	anti-parallel
Strand 3	B	121	126	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	D	144	148	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	95	first strand
Strand 2	C	79	85	anti-parallel
Strand 3	C	121	126	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	D	51	55	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	95	first strand
Strand 2	D	79	84	anti-parallel
Strand 3	D	121	126	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	55	first strand
Strand 2	F	144	148	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	95	first strand
Strand 2	E	79	84	anti-parallel
Strand 3	E	121	126	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	F	51	55	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	95	first strand
Strand 2	F	79	85	anti-parallel
Strand 3	F	121	126	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	55	first strand
Strand 2	H	144	148	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	95	first strand
Strand 2	G	79	85	anti-parallel
Strand 3	G	121	126	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	148	first strand
Strand 2	H	51	55	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	95	first strand
Strand 2	H	79	84	anti-parallel
Strand 3	H	121	126	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UJI