Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKA entry

There are 9 chains in PDB entry 9UKA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	LEU 327
B	GLU 5	LEU 327
C	GLU 5	PRO 319
D	GLU 5	GLU 320
E	GLU 5	ALA 328
F	GLU 5	ALA 328
G	PHE 312	GLU 621
a	ASP 21	GLU 224
N	VAL 369	LEU 1255

There are148 helices in PDB entry 9UKA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed alpha
Helix 2	AA2	A	50	63	Right-handed alpha
Helix 3	AA3	A	78	88	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	206	211	Right-handed alpha
Helix 8	AA8	A	221	233	Right-handed alpha
Helix 9	AA9	A	234	237	Right-handed 310
Helix 10	AB1	A	238	262	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	286	292	Right-handed alpha
Helix 13	AB4	A	299	315	Right-handed alpha
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	B	18	23	Right-handed alpha
Helix 16	AB7	B	50	64	Right-handed alpha
Helix 17	AB8	B	76	87	Right-handed alpha
Helix 18	AB9	B	102	107	Right-handed alpha
Helix 19	AC1	B	126	134	Right-handed alpha
Helix 20	AC2	B	147	149	Right-handed 310
Helix 21	AC3	B	150	160	Right-handed alpha
Helix 22	AC4	B	207	211	Right-handed 310
Helix 23	AC5	B	221	231	Right-handed alpha
Helix 24	AC6	B	238	261	Right-handed alpha
Helix 25	AC7	B	269	284	Right-handed alpha
Helix 26	AC8	B	288	294	Right-handed alpha
Helix 27	AC9	B	299	314	Right-handed alpha
Helix 28	AD1	C	56	64	Right-handed alpha
Helix 29	AD2	C	78	89	Right-handed alpha
Helix 30	AD3	C	102	107	Right-handed alpha
Helix 31	AD4	C	127	134	Right-handed alpha
Helix 32	AD5	C	147	157	Right-handed alpha
Helix 33	AD6	C	158	160	Right-handed 310
Helix 34	AD7	C	206	210	Right-handed 310
Helix 35	AD8	C	221	231	Right-handed alpha
Helix 36	AD9	C	232	237	Right-handed 310
Helix 37	AE1	C	238	261	Right-handed alpha
Helix 38	AE2	C	269	284	Right-handed alpha
Helix 39	AE3	C	288	294	Right-handed alpha
Helix 40	AE4	C	299	314	Right-handed alpha
Helix 41	AE5	D	18	23	Right-handed alpha
Helix 42	AE6	D	50	63	Right-handed alpha
Helix 43	AE7	D	77	88	Right-handed alpha
Helix 44	AE8	D	102	107	Right-handed alpha
Helix 45	AE9	D	127	134	Right-handed alpha
Helix 46	AF1	D	150	155	Right-handed 310
Helix 47	AF2	D	204	210	Right-handed alpha
Helix 48	AF3	D	221	233	Right-handed alpha
Helix 49	AF4	D	238	262	Right-handed alpha
Helix 50	AF5	D	269	280	Right-handed alpha
Helix 51	AF6	D	286	294	Right-handed alpha
Helix 52	AF7	D	300	315	Right-handed alpha
Helix 53	AF8	E	18	23	Right-handed alpha
Helix 54	AF9	E	51	63	Right-handed alpha
Helix 55	AG1	E	77	88	Right-handed alpha
Helix 56	AG2	E	102	107	Right-handed alpha
Helix 57	AG3	E	114	118	Right-handed 310
Helix 58	AG4	E	126	134	Right-handed alpha
Helix 59	AG5	E	143	146	Right-handed 310
Helix 60	AG6	E	147	152	Right-handed alpha
Helix 61	AG7	E	154	160	Right-handed alpha
Helix 62	AG8	E	204	211	Right-handed alpha
Helix 63	AG9	E	221	233	Right-handed alpha
Helix 64	AH1	E	234	237	Right-handed 310
Helix 65	AH2	E	238	261	Right-handed alpha
Helix 66	AH3	E	271	284	Right-handed alpha
Helix 67	AH4	E	285	292	Right-handed alpha
Helix 68	AH5	E	302	315	Right-handed alpha
Helix 69	AH6	F	18	23	Right-handed alpha
Helix 70	AH7	F	50	64	Right-handed alpha
Helix 71	AH8	F	76	88	Right-handed alpha
Helix 72	AH9	F	102	107	Right-handed alpha
Helix 73	AI1	F	126	134	Right-handed alpha
Helix 74	AI2	F	143	146	Right-handed 310
Helix 75	AI3	F	147	159	Right-handed alpha
Helix 76	AI4	F	204	210	Right-handed alpha
Helix 77	AI5	F	221	233	Right-handed alpha
Helix 78	AI6	F	240	262	Right-handed alpha
Helix 79	AI7	F	269	284	Right-handed alpha
Helix 80	AI8	F	285	294	Right-handed alpha
Helix 81	AI9	F	299	315	Right-handed alpha
Helix 82	AJ1	G	330	335	Right-handed alpha
Helix 83	AJ2	G	336	354	Right-handed alpha
Helix 84	AJ3	G	354	373	Right-handed alpha
Helix 85	AJ4	G	390	397	Right-handed alpha
Helix 86	AJ5	G	429	450	Right-handed alpha
Helix 87	AJ6	G	468	475	Right-handed alpha
Helix 88	AJ7	G	498	503	Right-handed alpha
Helix 89	AJ8	G	504	511	Right-handed 310
Helix 90	AJ9	G	519	534	Right-handed alpha
Helix 91	AK1	G	553	558	Right-handed alpha
Helix 92	AK2	G	560	578	Right-handed alpha
Helix 93	AK3	G	590	594	Right-handed 310
Helix 94	AK4	G	603	621	Right-handed alpha
Helix 95	AK5	a	22	38	Right-handed alpha
Helix 96	AK6	a	68	89	Right-handed alpha
Helix 97	AK7	a	90	95	Right-handed alpha
Helix 98	AK8	a	101	113	Right-handed alpha
Helix 99	AK9	a	113	123	Right-handed alpha
Helix 100	AL1	a	124	143	Right-handed alpha
Helix 101	AL2	a	144	147	Right-handed 310
Helix 102	AL3	a	155	168	Right-handed alpha
Helix 103	AL4	a	173	177	Right-handed 310
Helix 104	AL5	a	178	192	Right-handed alpha
Helix 105	AL6	a	193	196	Right-handed 310
Helix 106	AL7	a	197	204	Right-handed alpha
Helix 107	AL8	a	204	219	Right-handed alpha
Helix 108	AL9	N	370	374	Right-handed alpha
Helix 109	AM1	N	404	418	Right-handed alpha
Helix 110	AM2	N	427	437	Right-handed alpha
Helix 111	AM3	N	454	463	Right-handed alpha
Helix 112	AM4	N	466	477	Right-handed alpha
Helix 113	AM5	N	529	541	Right-handed alpha
Helix 114	AM6	N	571	576	Right-handed alpha
Helix 115	AM7	N	590	596	Right-handed alpha
Helix 116	AM8	N	596	601	Right-handed alpha
Helix 117	AM9	N	620	636	Right-handed alpha
Helix 118	AN1	N	639	657	Right-handed alpha
Helix 119	AN2	N	670	688	Right-handed alpha
Helix 120	AN3	N	704	714	Right-handed alpha
Helix 121	AN4	N	727	731	Right-handed 310
Helix 122	AN5	N	732	742	Right-handed alpha
Helix 123	AN6	N	748	752	Right-handed 310
Helix 124	AN7	N	763	770	Right-handed alpha
Helix 125	AN8	N	776	791	Right-handed alpha
Helix 126	AN9	N	802	804	Right-handed 310
Helix 127	AO1	N	805	815	Right-handed alpha
Helix 128	AO2	N	815	837	Right-handed alpha
Helix 129	AO3	N	872	880	Right-handed alpha
Helix 130	AO4	N	882	895	Right-handed alpha
Helix 131	AO5	N	906	912	Right-handed alpha
Helix 132	AO6	N	915	925	Right-handed alpha
Helix 133	AO7	N	945	950	Right-handed alpha
Helix 134	AO8	N	961	968	Right-handed alpha
Helix 135	AO9	N	968	985	Right-handed alpha
Helix 136	AP1	N	992	1008	Right-handed alpha
Helix 137	AP2	N	1011	1020	Right-handed alpha
Helix 138	AP3	N	1034	1041	Right-handed alpha
Helix 139	AP4	N	1047	1058	Right-handed alpha
Helix 140	AP5	N	1071	1082	Right-handed alpha
Helix 141	AP6	N	1109	1118	Right-handed alpha
Helix 142	AP7	N	1139	1150	Right-handed alpha
Helix 143	AP8	N	1153	1162	Right-handed alpha
Helix 144	AP9	N	1165	1185	Right-handed alpha
Helix 145	AQ1	N	1193	1202	Right-handed alpha
Helix 146	AQ2	N	1203	1214	Right-handed alpha
Helix 147	AQ3	N	1214	1231	Right-handed alpha
Helix 148	AQ4	N	1240	1252	Right-handed alpha

There are 28 sheets in PDB entry 9UKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	29	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	137	141	parallel
Strand 3	A	180	183	parallel
Strand 4	A	67	71	parallel
Strand 5	A	213	217	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	182	185	parallel
Strand 4	B	67	70	parallel
Strand 5	B	213	215	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	119	125	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	180	185	parallel
Strand 4	C	67	71	parallel
Strand 5	C	213	217	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	180	184	parallel
Strand 4	D	67	69	parallel
Strand 5	D	213	215	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	29	32	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	181	184	parallel
Strand 4	E	67	69	parallel
Strand 5	E	213	215	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	121	125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	17	first strand
Strand 2	F	29	30	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	137	141	parallel
Strand 3	F	181	185	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	115	first strand
Strand 2	F	118	123	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	326	329	first strand
Strand 2	G	487	493	parallel
Strand 3	G	452	459	anti-parallel
Strand 4	G	415	421	parallel
Strand 5	G	538	545	parallel
Strand 6	G	581	586	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	381	first strand
Strand 2	G	404	406	anti-parallel
Strand 3	G	385	386	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	43	46	first strand
Strand 2	a	57	60	parallel
Strand 3	a	52	53	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	504	507	first strand
Strand 2	N	382	385	parallel
Strand 3	N	548	551	parallel
Strand 4	N	582	585	parallel
Strand 5	N	604	606	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	401	402	first strand
Strand 2	N	695	696	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	614	615	first strand
Strand 2	N	689	690	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	956	957	first strand
Strand 2	N	901	904	parallel
Strand 3	N	1084	1089	parallel
Strand 4	N	1122	1127	parallel
Strand 5	N	1136	1138	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	927	931	first strand
Strand 2	N	938	943	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1023	1025	first strand
Strand 2	N	1060	1063	anti-parallel
Strand 3	N	1066	1070	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKA