Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKB entry

There are 8 chains in PDB entry 9UKB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	GLU 317
B	ILE 8	GLU 317
C	ALA 9	PRO 319
D	ILE 8	PRO 319
E	ILE 8	SER 321
F	ILE 8	ILE 325
G	ALA 313	GLU 620
N	ALA 366	LEU 1255

There are134 helices in PDB entry 9UKB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed alpha
Helix 2	AA2	A	50	63	Right-handed alpha
Helix 3	AA3	A	76	88	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	151	159	Right-handed alpha
Helix 7	AA7	A	207	211	Right-handed 310
Helix 8	AA8	A	221	231	Right-handed alpha
Helix 9	AA9	A	232	237	Right-handed 310
Helix 10	AB1	A	238	262	Right-handed alpha
Helix 11	AB2	A	269	278	Right-handed alpha
Helix 12	AB3	A	286	294	Right-handed alpha
Helix 13	AB4	A	295	298	Right-handed 310
Helix 14	AB5	A	299	313	Right-handed alpha
Helix 15	AB6	B	18	23	Right-handed alpha
Helix 16	AB7	B	50	63	Right-handed alpha
Helix 17	AB8	B	76	89	Right-handed alpha
Helix 18	AB9	B	126	133	Right-handed alpha
Helix 19	AC1	B	150	159	Right-handed alpha
Helix 20	AC2	B	221	233	Right-handed alpha
Helix 21	AC3	B	238	262	Right-handed alpha
Helix 22	AC4	B	269	284	Right-handed alpha
Helix 23	AC5	B	286	294	Right-handed alpha
Helix 24	AC6	B	295	298	Right-handed 310
Helix 25	AC7	B	302	315	Right-handed alpha
Helix 26	AC8	C	55	64	Right-handed alpha
Helix 27	AC9	C	76	88	Right-handed alpha
Helix 28	AD1	C	102	107	Right-handed alpha
Helix 29	AD2	C	127	134	Right-handed alpha
Helix 30	AD3	C	143	146	Right-handed 310
Helix 31	AD4	C	149	158	Right-handed alpha
Helix 32	AD5	C	206	211	Right-handed alpha
Helix 33	AD6	C	221	233	Right-handed alpha
Helix 34	AD7	C	234	237	Right-handed 310
Helix 35	AD8	C	241	262	Right-handed alpha
Helix 36	AD9	C	269	284	Right-handed alpha
Helix 37	AE1	C	285	292	Right-handed alpha
Helix 38	AE2	C	299	315	Right-handed alpha
Helix 39	AE3	D	50	64	Right-handed alpha
Helix 40	AE4	D	76	88	Right-handed alpha
Helix 41	AE5	D	102	108	Right-handed alpha
Helix 42	AE6	D	127	133	Right-handed alpha
Helix 43	AE7	D	153	160	Right-handed alpha
Helix 44	AE8	D	204	209	Right-handed alpha
Helix 45	AE9	D	221	233	Right-handed alpha
Helix 46	AF1	D	238	262	Right-handed alpha
Helix 47	AF2	D	269	284	Right-handed alpha
Helix 48	AF3	D	286	294	Right-handed alpha
Helix 49	AF4	D	299	314	Right-handed alpha
Helix 50	AF5	E	50	63	Right-handed alpha
Helix 51	AF6	E	76	88	Right-handed alpha
Helix 52	AF7	E	102	107	Right-handed alpha
Helix 53	AF8	E	126	133	Right-handed alpha
Helix 54	AF9	E	143	146	Right-handed 310
Helix 55	AG1	E	149	153	Right-handed 310
Helix 56	AG2	E	154	159	Right-handed alpha
Helix 57	AG3	E	204	210	Right-handed alpha
Helix 58	AG4	E	221	233	Right-handed alpha
Helix 59	AG5	E	241	261	Right-handed alpha
Helix 60	AG6	E	271	284	Right-handed alpha
Helix 61	AG7	E	285	292	Right-handed alpha
Helix 62	AG8	E	294	298	Right-handed 310
Helix 63	AG9	E	299	315	Right-handed alpha
Helix 64	AH1	F	17	23	Right-handed alpha
Helix 65	AH2	F	50	63	Right-handed alpha
Helix 66	AH3	F	76	88	Right-handed alpha
Helix 67	AH4	F	102	107	Right-handed alpha
Helix 68	AH5	F	126	134	Right-handed alpha
Helix 69	AH6	F	142	146	Right-handed 310
Helix 70	AH7	F	147	158	Right-handed alpha
Helix 71	AH8	F	205	211	Right-handed alpha
Helix 72	AH9	F	222	233	Right-handed alpha
Helix 73	AI1	F	238	261	Right-handed alpha
Helix 74	AI2	F	269	284	Right-handed alpha
Helix 75	AI3	F	285	294	Right-handed alpha
Helix 76	AI4	F	302	314	Right-handed alpha
Helix 77	AI5	G	331	335	Right-handed alpha
Helix 78	AI6	G	336	355	Right-handed alpha
Helix 79	AI7	G	357	370	Right-handed alpha
Helix 80	AI8	G	371	373	Right-handed 310
Helix 81	AI9	G	387	389	Right-handed 310
Helix 82	AJ1	G	390	397	Right-handed alpha
Helix 83	AJ2	G	424	428	Right-handed 310
Helix 84	AJ3	G	429	450	Right-handed alpha
Helix 85	AJ4	G	466	475	Right-handed alpha
Helix 86	AJ5	G	498	507	Right-handed alpha
Helix 87	AJ6	G	508	511	Right-handed 310
Helix 88	AJ7	G	519	533	Right-handed alpha
Helix 89	AJ8	G	551	558	Right-handed alpha
Helix 90	AJ9	G	560	578	Right-handed alpha
Helix 91	AK1	G	609	620	Right-handed alpha
Helix 92	AK2	N	367	374	Right-handed alpha
Helix 93	AK3	N	391	395	Right-handed 310
Helix 94	AK4	N	402	418	Right-handed alpha
Helix 95	AK5	N	427	438	Right-handed alpha
Helix 96	AK6	N	455	464	Right-handed alpha
Helix 97	AK7	N	466	478	Right-handed alpha
Helix 98	AK8	N	479	483	Right-handed 310
Helix 99	AK9	N	516	521	Right-handed alpha
Helix 100	AL1	N	529	541	Right-handed alpha
Helix 101	AL2	N	571	578	Right-handed alpha
Helix 102	AL3	N	594	602	Right-handed alpha
Helix 103	AL4	N	619	635	Right-handed alpha
Helix 104	AL5	N	639	658	Right-handed alpha
Helix 105	AL6	N	670	688	Right-handed alpha
Helix 106	AL7	N	704	709	Right-handed alpha
Helix 107	AL8	N	710	715	Right-handed alpha
Helix 108	AL9	N	721	725	Right-handed 310
Helix 109	AM1	N	727	731	Right-handed 310
Helix 110	AM2	N	732	741	Right-handed alpha
Helix 111	AM3	N	763	770	Right-handed alpha
Helix 112	AM4	N	776	793	Right-handed alpha
Helix 113	AM5	N	802	815	Right-handed alpha
Helix 114	AM6	N	815	837	Right-handed alpha
Helix 115	AM7	N	847	851	Right-handed 310
Helix 116	AM8	N	872	881	Right-handed alpha
Helix 117	AM9	N	881	894	Right-handed alpha
Helix 118	AN1	N	915	924	Right-handed alpha
Helix 119	AN2	N	945	950	Right-handed alpha
Helix 120	AN3	N	961	968	Right-handed alpha
Helix 121	AN4	N	969	985	Right-handed alpha
Helix 122	AN5	N	992	1007	Right-handed alpha
Helix 123	AN6	N	1011	1019	Right-handed alpha
Helix 124	AN7	N	1034	1041	Right-handed alpha
Helix 125	AN8	N	1046	1058	Right-handed alpha
Helix 126	AN9	N	1072	1082	Right-handed alpha
Helix 127	AO1	N	1099	1117	Right-handed alpha
Helix 128	AO2	N	1138	1149	Right-handed alpha
Helix 129	AO3	N	1153	1162	Right-handed alpha
Helix 130	AO4	N	1166	1186	Right-handed alpha
Helix 131	AO5	N	1191	1200	Right-handed alpha
Helix 132	AO6	N	1203	1214	Right-handed alpha
Helix 133	AO7	N	1214	1231	Right-handed alpha
Helix 134	AO8	N	1240	1255	Right-handed alpha

There are 30 sheets in PDB entry 9UKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	29	32	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	180	185	parallel
Strand 3	A	137	141	parallel
Strand 4	A	92	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	113	first strand
Strand 2	A	120	125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	137	140	parallel
Strand 3	B	180	185	parallel
Strand 4	B	67	70	parallel
Strand 5	B	213	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	119	125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	181	185	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	215	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	180	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	115	first strand
Strand 2	D	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	182	185	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	113	first strand
Strand 2	E	120	125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	165	first strand
Strand 2	E	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	95	first strand
Strand 2	F	137	140	parallel
Strand 3	F	180	185	parallel
Strand 4	F	67	71	parallel
Strand 5	F	213	217	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	115	first strand
Strand 2	F	118	125	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	330	first strand
Strand 2	G	487	491	parallel
Strand 3	G	452	460	anti-parallel
Strand 4	G	415	421	parallel
Strand 5	G	538	544	parallel
Strand 6	G	584	585	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	382	385	first strand
Strand 2	N	504	507	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	451	454	first strand
Strand 2	N	492	495	anti-parallel
Strand 3	N	486	487	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	548	549	first strand
Strand 2	N	582	584	parallel
Strand 3	N	604	605	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	614	615	first strand
Strand 2	N	689	690	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	900	905	first strand
Strand 2	N	955	960	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	927	928	first strand
Strand 2	N	942	943	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1024	1025	first strand
Strand 2	N	1060	1061	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1084	1089	first strand
Strand 2	N	1122	1127	parallel
Strand 3	N	1135	1137	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKB