Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKC entry

There are 9 chains in PDB entry 9UKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LEU 327
B	VAL 4	GLU 320
C	VAL 4	PRO 319
D	GLU 5	GLU 320
E	GLU 5	ALA 328
F	GLU 5	ALA 328
G	PHE 309	GLY 623
a	ASP 21	GLU 224
N	ASP 356	LEU 1255

There are148 helices in PDB entry 9UKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed alpha
Helix 2	AA2	A	50	63	Right-handed alpha
Helix 3	AA3	A	76	88	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	134	Right-handed alpha
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	206	210	Right-handed 310
Helix 8	AA8	A	221	226	Right-handed alpha
Helix 9	AA9	A	226	232	Right-handed alpha
Helix 10	AB1	A	238	255	Right-handed alpha
Helix 11	AB2	A	257	262	Right-handed alpha
Helix 12	AB3	A	269	283	Right-handed alpha
Helix 13	AB4	A	287	292	Right-handed alpha
Helix 14	AB5	A	294	298	Right-handed 310
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	321	327	Right-handed alpha
Helix 17	AB8	B	18	23	Right-handed alpha
Helix 18	AB9	B	50	62	Right-handed alpha
Helix 19	AC1	B	76	88	Right-handed alpha
Helix 20	AC2	B	102	107	Right-handed alpha
Helix 21	AC3	B	126	134	Right-handed alpha
Helix 22	AC4	B	150	160	Right-handed alpha
Helix 23	AC5	B	221	231	Right-handed alpha
Helix 24	AC6	B	238	262	Right-handed alpha
Helix 25	AC7	B	269	284	Right-handed alpha
Helix 26	AC8	B	286	294	Right-handed alpha
Helix 27	AC9	B	302	315	Right-handed alpha
Helix 28	AD1	C	56	63	Right-handed alpha
Helix 29	AD2	C	78	89	Right-handed alpha
Helix 30	AD3	C	102	107	Right-handed alpha
Helix 31	AD4	C	127	134	Right-handed alpha
Helix 32	AD5	C	149	158	Right-handed alpha
Helix 33	AD6	C	206	211	Right-handed 310
Helix 34	AD7	C	221	232	Right-handed alpha
Helix 35	AD8	C	238	262	Right-handed alpha
Helix 36	AD9	C	269	284	Right-handed alpha
Helix 37	AE1	C	285	294	Right-handed alpha
Helix 38	AE2	C	295	298	Right-handed 310
Helix 39	AE3	C	299	301	Right-handed 310
Helix 40	AE4	C	302	315	Right-handed alpha
Helix 41	AE5	D	18	23	Right-handed alpha
Helix 42	AE6	D	53	64	Right-handed alpha
Helix 43	AE7	D	76	88	Right-handed alpha
Helix 44	AE8	D	102	107	Right-handed alpha
Helix 45	AE9	D	126	134	Right-handed alpha
Helix 46	AF1	D	147	152	Right-handed alpha
Helix 47	AF2	D	154	159	Right-handed alpha
Helix 48	AF3	D	204	209	Right-handed alpha
Helix 49	AF4	D	221	233	Right-handed alpha
Helix 50	AF5	D	234	238	Right-handed 310
Helix 51	AF6	D	239	262	Right-handed alpha
Helix 52	AF7	D	269	280	Right-handed alpha
Helix 53	AF8	D	285	294	Right-handed alpha
Helix 54	AF9	D	299	314	Right-handed alpha
Helix 55	AG1	E	50	64	Right-handed alpha
Helix 56	AG2	E	76	88	Right-handed alpha
Helix 57	AG3	E	102	107	Right-handed alpha
Helix 58	AG4	E	114	118	Right-handed 310
Helix 59	AG5	E	126	133	Right-handed alpha
Helix 60	AG6	E	143	146	Right-handed 310
Helix 61	AG7	E	151	156	Right-handed alpha
Helix 62	AG8	E	204	209	Right-handed alpha
Helix 63	AG9	E	221	233	Right-handed alpha
Helix 64	AH1	E	234	237	Right-handed 310
Helix 65	AH2	E	238	239	Right-handed 310
Helix 66	AH3	E	240	261	Right-handed alpha
Helix 67	AH4	E	271	284	Right-handed alpha
Helix 68	AH5	E	285	292	Right-handed alpha
Helix 69	AH6	E	294	298	Right-handed 310
Helix 70	AH7	E	302	314	Right-handed alpha
Helix 71	AH8	F	50	64	Right-handed alpha
Helix 72	AH9	F	76	88	Right-handed alpha
Helix 73	AI1	F	103	108	Right-handed alpha
Helix 74	AI2	F	126	134	Right-handed alpha
Helix 75	AI3	F	143	146	Right-handed 310
Helix 76	AI4	F	147	158	Right-handed alpha
Helix 77	AI5	F	204	209	Right-handed alpha
Helix 78	AI6	F	221	233	Right-handed alpha
Helix 79	AI7	F	241	261	Right-handed alpha
Helix 80	AI8	F	269	284	Right-handed alpha
Helix 81	AI9	F	285	294	Right-handed alpha
Helix 82	AJ1	F	299	315	Right-handed alpha
Helix 83	AJ2	G	336	372	Right-handed alpha
Helix 84	AJ3	G	390	397	Right-handed alpha
Helix 85	AJ4	G	424	428	Right-handed 310
Helix 86	AJ5	G	429	450	Right-handed alpha
Helix 87	AJ6	G	466	475	Right-handed alpha
Helix 88	AJ7	G	498	507	Right-handed alpha
Helix 89	AJ8	G	508	511	Right-handed 310
Helix 90	AJ9	G	519	534	Right-handed alpha
Helix 91	AK1	G	551	556	Right-handed alpha
Helix 92	AK2	G	561	577	Right-handed alpha
Helix 93	AK3	G	606	620	Right-handed alpha
Helix 94	AK4	a	22	38	Right-handed alpha
Helix 95	AK5	a	68	88	Right-handed alpha
Helix 96	AK6	a	90	98	Right-handed alpha
Helix 97	AK7	a	101	124	Right-handed alpha
Helix 98	AK8	a	125	142	Right-handed alpha
Helix 99	AK9	a	149	153	Right-handed 310
Helix 100	AL1	a	154	169	Right-handed alpha
Helix 101	AL2	a	173	177	Right-handed 310
Helix 102	AL3	a	178	191	Right-handed alpha
Helix 103	AL4	a	194	198	Right-handed 310
Helix 104	AL5	a	199	204	Right-handed 310
Helix 105	AL6	a	205	219	Right-handed alpha
Helix 106	AL7	N	357	374	Right-handed alpha
Helix 107	AL8	N	375	379	Right-handed 310
Helix 108	AL9	N	391	395	Right-handed 310
Helix 109	AM1	N	403	418	Right-handed alpha
Helix 110	AM2	N	427	436	Right-handed alpha
Helix 111	AM3	N	455	464	Right-handed alpha
Helix 112	AM4	N	466	476	Right-handed alpha
Helix 113	AM5	N	529	541	Right-handed alpha
Helix 114	AM6	N	555	560	Right-handed alpha
Helix 115	AM7	N	571	578	Right-handed alpha
Helix 116	AM8	N	590	601	Right-handed alpha
Helix 117	AM9	N	620	631	Right-handed alpha
Helix 118	AN1	N	639	657	Right-handed alpha
Helix 119	AN2	N	659	664	Right-handed alpha
Helix 120	AN3	N	670	687	Right-handed alpha
Helix 121	AN4	N	704	714	Right-handed alpha
Helix 122	AN5	N	727	731	Right-handed 310
Helix 123	AN6	N	732	741	Right-handed alpha
Helix 124	AN7	N	748	752	Right-handed 310
Helix 125	AN8	N	776	793	Right-handed alpha
Helix 126	AN9	N	802	836	Right-handed alpha
Helix 127	AO1	N	872	894	Right-handed alpha
Helix 128	AO2	N	909	914	Right-handed alpha
Helix 129	AO3	N	915	926	Right-handed alpha
Helix 130	AO4	N	945	950	Right-handed alpha
Helix 131	AO5	N	961	968	Right-handed alpha
Helix 132	AO6	N	970	985	Right-handed alpha
Helix 133	AO7	N	992	1008	Right-handed alpha
Helix 134	AO8	N	1011	1020	Right-handed alpha
Helix 135	AO9	N	1034	1041	Right-handed alpha
Helix 136	AP1	N	1046	1058	Right-handed alpha
Helix 137	AP2	N	1072	1082	Right-handed alpha
Helix 138	AP3	N	1095	1098	Right-handed 310
Helix 139	AP4	N	1099	1107	Right-handed alpha
Helix 140	AP5	N	1107	1117	Right-handed alpha
Helix 141	AP6	N	1139	1149	Right-handed alpha
Helix 142	AP7	N	1153	1161	Right-handed alpha
Helix 143	AP8	N	1162	1164	Right-handed 310
Helix 144	AP9	N	1165	1186	Right-handed alpha
Helix 145	AQ1	N	1189	1201	Right-handed alpha
Helix 146	AQ2	N	1203	1214	Right-handed alpha
Helix 147	AQ3	N	1214	1231	Right-handed alpha
Helix 148	AQ4	N	1241	1255	Right-handed alpha

There are 32 sheets in PDB entry 9UKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	29	31	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	213	214	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	137	141	parallel
Strand 3	A	180	183	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	125	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	181	184	parallel
Strand 4	B	67	70	parallel
Strand 5	B	213	216	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	119	125	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	181	184	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	180	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	29	32	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	181	184	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	113	first strand
Strand 2	E	120	125	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	96	first strand
Strand 2	F	138	141	parallel
Strand 3	F	181	185	parallel
Strand 4	F	67	70	parallel
Strand 5	F	214	216	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	115	first strand
Strand 2	F	118	123	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	330	first strand
Strand 2	G	488	493	parallel
Strand 3	G	453	459	anti-parallel
Strand 4	G	416	418	parallel
Strand 5	G	539	541	parallel
Strand 6	G	581	587	parallel
Strand 7	G	544	545	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	330	first strand
Strand 2	G	488	493	parallel
Strand 3	G	453	459	anti-parallel
Strand 4	G	416	418	parallel
Strand 5	G	539	541	parallel
Strand 6	G	581	587	parallel
Strand 7	G	597	601	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	381	first strand
Strand 2	G	404	407	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	43	47	first strand
Strand 2	a	57	61	parallel
Strand 3	a	52	53	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	497	500	first strand
Strand 2	N	503	506	anti-parallel
Strand 3	N	381	384	parallel
Strand 4	N	548	550	parallel
Strand 5	N	582	587	parallel
Strand 6	N	604	608	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	401	402	first strand
Strand 2	N	695	696	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	451	454	first strand
Strand 2	N	492	495	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	613	614	first strand
Strand 2	N	690	691	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	900	905	first strand
Strand 2	N	955	960	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1023	1025	first strand
Strand 2	N	1060	1062	anti-parallel
Strand 3	N	1069	1070	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1085	1089	first strand
Strand 2	N	1123	1127	parallel
Strand 3	N	1135	1138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKC