Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKD entry

There are 9 chains in PDB entry 9UKD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	ALA 322
B	ALA 9	GLU 320
C	ALA 9	PRO 319
D	ALA 9	VAL 326
E	ILE 8	LEU 327
F	ALA 9	VAL 326
G	VAL 316	PHE 619
f	SER 6	SER 226
I	ASN 311	GLU 620

There are115 helices in PDB entry 9UKD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	50	64	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	102	108	Right-handed alpha
Helix 5	AA5	A	127	133	Right-handed alpha
Helix 6	AA6	A	148	156	Right-handed alpha
Helix 7	AA7	A	205	209	Right-handed alpha
Helix 8	AA8	A	224	233	Right-handed alpha
Helix 9	AA9	A	239	261	Right-handed alpha
Helix 10	AB1	A	269	283	Right-handed alpha
Helix 11	AB2	A	285	294	Right-handed alpha
Helix 12	AB3	A	295	298	Right-handed 310
Helix 13	AB4	A	302	312	Right-handed alpha
Helix 14	AB5	B	17	22	Right-handed alpha
Helix 15	AB6	B	51	63	Right-handed alpha
Helix 16	AB7	B	77	89	Right-handed alpha
Helix 17	AB8	B	102	107	Right-handed alpha
Helix 18	AB9	B	127	133	Right-handed alpha
Helix 19	AC1	B	152	157	Right-handed alpha
Helix 20	AC2	B	204	210	Right-handed alpha
Helix 21	AC3	B	221	234	Right-handed alpha
Helix 22	AC4	B	238	262	Right-handed alpha
Helix 23	AC5	B	269	284	Right-handed alpha
Helix 24	AC6	B	285	294	Right-handed alpha
Helix 25	AC7	B	295	298	Right-handed 310
Helix 26	AC8	B	299	315	Right-handed alpha
Helix 27	AC9	C	18	23	Right-handed alpha
Helix 28	AD1	C	50	64	Right-handed alpha
Helix 29	AD2	C	76	89	Right-handed alpha
Helix 30	AD3	C	102	107	Right-handed alpha
Helix 31	AD4	C	126	134	Right-handed alpha
Helix 32	AD5	C	147	159	Right-handed alpha
Helix 33	AD6	C	204	211	Right-handed alpha
Helix 34	AD7	C	221	233	Right-handed alpha
Helix 35	AD8	C	238	262	Right-handed alpha
Helix 36	AD9	C	269	283	Right-handed alpha
Helix 37	AE1	C	286	294	Right-handed alpha
Helix 38	AE2	C	295	298	Right-handed 310
Helix 39	AE3	C	299	315	Right-handed alpha
Helix 40	AE4	D	17	22	Right-handed alpha
Helix 41	AE5	D	51	64	Right-handed alpha
Helix 42	AE6	D	77	89	Right-handed alpha
Helix 43	AE7	D	102	107	Right-handed alpha
Helix 44	AE8	D	126	134	Right-handed alpha
Helix 45	AE9	D	142	146	Right-handed 310
Helix 46	AF1	D	147	156	Right-handed alpha
Helix 47	AF2	D	204	209	Right-handed alpha
Helix 48	AF3	D	221	233	Right-handed alpha
Helix 49	AF4	D	238	261	Right-handed alpha
Helix 50	AF5	D	269	284	Right-handed alpha
Helix 51	AF6	D	285	294	Right-handed alpha
Helix 52	AF7	D	295	298	Right-handed 310
Helix 53	AF8	D	302	314	Right-handed alpha
Helix 54	AF9	E	17	22	Right-handed alpha
Helix 55	AG1	E	50	64	Right-handed alpha
Helix 56	AG2	E	77	89	Right-handed alpha
Helix 57	AG3	E	103	107	Right-handed alpha
Helix 58	AG4	E	127	134	Right-handed alpha
Helix 59	AG5	E	143	146	Right-handed 310
Helix 60	AG6	E	204	209	Right-handed alpha
Helix 61	AG7	E	221	233	Right-handed alpha
Helix 62	AG8	E	238	262	Right-handed alpha
Helix 63	AG9	E	269	283	Right-handed alpha
Helix 64	AH1	E	285	294	Right-handed alpha
Helix 65	AH2	E	295	298	Right-handed 310
Helix 66	AH3	E	302	314	Right-handed alpha
Helix 67	AH4	F	18	22	Right-handed alpha
Helix 68	AH5	F	51	63	Right-handed alpha
Helix 69	AH6	F	76	89	Right-handed alpha
Helix 70	AH7	F	102	108	Right-handed alpha
Helix 71	AH8	F	126	133	Right-handed alpha
Helix 72	AH9	F	142	146	Right-handed 310
Helix 73	AI1	F	147	159	Right-handed alpha
Helix 74	AI2	F	204	211	Right-handed alpha
Helix 75	AI3	F	221	231	Right-handed alpha
Helix 76	AI4	F	233	237	Right-handed 310
Helix 77	AI5	F	238	262	Right-handed alpha
Helix 78	AI6	F	269	282	Right-handed alpha
Helix 79	AI7	F	286	294	Right-handed alpha
Helix 80	AI8	F	295	298	Right-handed 310
Helix 81	AI9	F	302	314	Right-handed alpha
Helix 82	AJ1	G	338	353	Right-handed alpha
Helix 83	AJ2	G	362	369	Right-handed 310
Helix 84	AJ3	G	390	395	Right-handed alpha
Helix 85	AJ4	G	429	449	Right-handed alpha
Helix 86	AJ5	G	466	476	Right-handed alpha
Helix 87	AJ6	G	498	503	Right-handed alpha
Helix 88	AJ7	G	504	506	Right-handed 310
Helix 89	AJ8	G	510	514	Right-handed 310
Helix 90	AJ9	G	521	534	Right-handed alpha
Helix 91	AK1	G	553	558	Right-handed 310
Helix 92	AK2	G	559	563	Right-handed 310
Helix 93	AK3	G	564	578	Right-handed alpha
Helix 94	AK4	f	25	34	Right-handed alpha
Helix 95	AK5	f	68	89	Right-handed alpha
Helix 96	AK6	f	90	97	Right-handed alpha
Helix 97	AK7	f	101	124	Right-handed alpha
Helix 98	AK8	f	127	142	Right-handed alpha
Helix 99	AK9	f	149	153	Right-handed 310
Helix 100	AL1	f	154	168	Right-handed alpha
Helix 101	AL2	f	185	191	Right-handed alpha
Helix 102	AL3	f	194	201	Right-handed alpha
Helix 103	AL4	f	204	219	Right-handed alpha
Helix 104	AL5	I	336	344	Right-handed alpha
Helix 105	AL6	I	347	351	Right-handed 310
Helix 106	AL7	I	356	365	Right-handed alpha
Helix 107	AL8	I	429	449	Right-handed alpha
Helix 108	AL9	I	466	475	Right-handed alpha
Helix 109	AM1	I	501	506	Right-handed alpha
Helix 110	AM2	I	519	529	Right-handed alpha
Helix 111	AM3	I	553	557	Right-handed 310
Helix 112	AM4	I	561	570	Right-handed alpha
Helix 113	AM5	I	571	576	Right-handed 310
Helix 114	AM6	I	607	609	Right-handed 310
Helix 115	AM7	I	610	618	Right-handed alpha

There are 28 sheets in PDB entry 9UKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	67	71	parallel
Strand 3	A	213	216	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	137	141	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	122	124	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	137	140	parallel
Strand 3	B	182	184	parallel
Strand 4	B	67	69	parallel
Strand 5	B	213	215	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	118	120	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	181	185	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	31	32	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	137	140	parallel
Strand 3	D	180	183	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	171	173	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	30	32	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	139	141	parallel
Strand 3	E	182	185	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	115	first strand
Strand 2	E	118	125	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	166	first strand
Strand 2	E	171	172	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	185	first strand
Strand 2	F	67	70	parallel
Strand 3	F	213	216	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	139	140	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	122	123	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	172	173	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	329	first strand
Strand 2	G	487	490	parallel
Strand 3	G	453	460	anti-parallel
Strand 4	G	415	422	parallel
Strand 5	G	538	541	parallel
Strand 6	G	581	582	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	381	first strand
Strand 2	G	404	407	anti-parallel
Strand 3	G	385	386	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	544	545	first strand
Strand 2	G	584	587	parallel
Strand 3	G	598	601	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	43	46	first strand
Strand 2	f	57	60	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	456	first strand
Strand 2	I	415	420	parallel
Strand 3	I	538	544	parallel
Strand 4	I	581	585	parallel
Strand 5	I	598	599	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKD