Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKE entry

There are 7 chains in PDB entry 9UKE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	PRO 319
B	ILE 8	LEU 318
C	ILE 8	SER 321
D	ALA 9	ALA 328
E	ALA 9	LEU 327
F	ALA 9	LEU 327
G	SER 376	GLU 407

There are 85 helices in PDB entry 9UKE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed alpha
Helix 2	AA2	A	50	64	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	151	159	Right-handed alpha
Helix 7	AA7	A	204	209	Right-handed alpha
Helix 8	AA8	A	221	232	Right-handed alpha
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	238	262	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	285	295	Right-handed alpha
Helix 13	AB4	A	296	298	Right-handed 310
Helix 14	AB5	A	299	301	Right-handed 310
Helix 15	AB6	A	302	314	Right-handed alpha
Helix 16	AB7	B	18	23	Right-handed alpha
Helix 17	AB8	B	50	64	Right-handed alpha
Helix 18	AB9	B	77	88	Right-handed alpha
Helix 19	AC1	B	126	134	Right-handed alpha
Helix 20	AC2	B	143	146	Right-handed 310
Helix 21	AC3	B	147	160	Right-handed alpha
Helix 22	AC4	B	205	210	Right-handed alpha
Helix 23	AC5	B	223	233	Right-handed alpha
Helix 24	AC6	B	234	237	Right-handed 310
Helix 25	AC7	B	241	261	Right-handed alpha
Helix 26	AC8	B	269	284	Right-handed alpha
Helix 27	AC9	B	286	294	Right-handed alpha
Helix 28	AD1	B	302	315	Right-handed alpha
Helix 29	AD2	C	18	23	Right-handed alpha
Helix 30	AD3	C	50	64	Right-handed alpha
Helix 31	AD4	C	76	89	Right-handed alpha
Helix 32	AD5	C	102	107	Right-handed alpha
Helix 33	AD6	C	126	133	Right-handed alpha
Helix 34	AD7	C	150	159	Right-handed alpha
Helix 35	AD8	C	207	211	Right-handed 310
Helix 36	AD9	C	221	233	Right-handed alpha
Helix 37	AE1	C	234	237	Right-handed 310
Helix 38	AE2	C	238	261	Right-handed alpha
Helix 39	AE3	C	269	284	Right-handed alpha
Helix 40	AE4	C	285	295	Right-handed alpha
Helix 41	AE5	C	302	315	Right-handed alpha
Helix 42	AE6	D	18	23	Right-handed alpha
Helix 43	AE7	D	51	64	Right-handed alpha
Helix 44	AE8	D	76	89	Right-handed alpha
Helix 45	AE9	D	102	107	Right-handed alpha
Helix 46	AF1	D	126	133	Right-handed alpha
Helix 47	AF2	D	149	156	Right-handed 310
Helix 48	AF3	D	204	210	Right-handed alpha
Helix 49	AF4	D	221	233	Right-handed alpha
Helix 50	AF5	D	234	237	Right-handed 310
Helix 51	AF6	D	238	261	Right-handed alpha
Helix 52	AF7	D	269	284	Right-handed alpha
Helix 53	AF8	D	285	295	Right-handed alpha
Helix 54	AF9	D	302	315	Right-handed alpha
Helix 55	AG1	E	17	22	Right-handed alpha
Helix 56	AG2	E	51	64	Right-handed alpha
Helix 57	AG3	E	77	89	Right-handed alpha
Helix 58	AG4	E	102	107	Right-handed alpha
Helix 59	AG5	E	126	133	Right-handed alpha
Helix 60	AG6	E	143	146	Right-handed 310
Helix 61	AG7	E	147	152	Right-handed alpha
Helix 62	AG8	E	153	156	Right-handed 310
Helix 63	AG9	E	204	209	Right-handed alpha
Helix 64	AH1	E	221	232	Right-handed alpha
Helix 65	AH2	E	233	237	Right-handed 310
Helix 66	AH3	E	238	262	Right-handed alpha
Helix 67	AH4	E	269	284	Right-handed alpha
Helix 68	AH5	E	285	294	Right-handed alpha
Helix 69	AH6	E	295	298	Right-handed 310
Helix 70	AH7	E	302	314	Right-handed alpha
Helix 71	AH8	F	17	22	Right-handed alpha
Helix 72	AH9	F	50	64	Right-handed alpha
Helix 73	AI1	F	77	89	Right-handed alpha
Helix 74	AI2	F	102	107	Right-handed alpha
Helix 75	AI3	F	126	133	Right-handed alpha
Helix 76	AI4	F	143	146	Right-handed 310
Helix 77	AI5	F	147	159	Right-handed alpha
Helix 78	AI6	F	204	209	Right-handed alpha
Helix 79	AI7	F	221	233	Right-handed alpha
Helix 80	AI8	F	238	262	Right-handed alpha
Helix 81	AI9	F	269	283	Right-handed alpha
Helix 82	AJ1	F	286	295	Right-handed alpha
Helix 83	AJ2	F	302	315	Right-handed alpha
Helix 84	AJ3	G	388	390	Right-handed 310
Helix 85	AJ4	G	391	397	Right-handed alpha

There are 24 sheets in PDB entry 9UKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	29	30	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	137	141	parallel
Strand 3	A	180	185	parallel
Strand 4	A	67	70	parallel
Strand 5	A	213	216	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	124	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	118	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	29	30	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	180	186	parallel
Strand 4	B	67	71	parallel
Strand 5	B	213	217	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	115	first strand
Strand 2	B	118	125	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	180	184	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	172	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	181	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	171	173	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	30	32	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	180	185	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	121	125	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	30	32	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	137	141	parallel
Strand 3	F	180	185	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	114	first strand
Strand 2	F	119	125	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	172	173	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	381	first strand
Strand 2	G	404	406	anti-parallel
Strand 3	G	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKE