Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKI entry

There are 9 chains in PDB entry 9UKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	LEU 318
B	ALA 9	PRO 319
C	ALA 9	PRO 319
D	ALA 9	PRO 319
E	ALA 9	ALA 328
F	ALA 9	ILE 325
f	ASP 14	ALA 222
G	ASP 317	GLU 620
I	ASP 317	GLU 620

There are117 helices in PDB entry 9UKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed alpha
Helix 2	AA2	A	50	64	Right-handed alpha
Helix 3	AA3	A	76	89	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	134	Right-handed alpha
Helix 6	AA6	A	150	159	Right-handed alpha
Helix 7	AA7	A	204	209	Right-handed alpha
Helix 8	AA8	A	221	233	Right-handed alpha
Helix 9	AA9	A	234	237	Right-handed 310
Helix 10	AB1	A	238	262	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	285	294	Right-handed alpha
Helix 13	AB4	A	299	315	Right-handed alpha
Helix 14	AB5	B	50	63	Right-handed alpha
Helix 15	AB6	B	76	89	Right-handed alpha
Helix 16	AB7	B	102	108	Right-handed alpha
Helix 17	AB8	B	127	134	Right-handed alpha
Helix 18	AB9	B	142	146	Right-handed 310
Helix 19	AC1	B	147	160	Right-handed alpha
Helix 20	AC2	B	206	210	Right-handed 310
Helix 21	AC3	B	225	233	Right-handed alpha
Helix 22	AC4	B	234	237	Right-handed 310
Helix 23	AC5	B	238	261	Right-handed alpha
Helix 24	AC6	B	272	284	Right-handed alpha
Helix 25	AC7	B	285	295	Right-handed alpha
Helix 26	AC8	B	296	298	Right-handed 310
Helix 27	AC9	B	299	301	Right-handed 310
Helix 28	AD1	B	302	314	Right-handed alpha
Helix 29	AD2	C	18	23	Right-handed alpha
Helix 30	AD3	C	50	63	Right-handed alpha
Helix 31	AD4	C	76	88	Right-handed alpha
Helix 32	AD5	C	102	107	Right-handed alpha
Helix 33	AD6	C	127	132	Right-handed alpha
Helix 34	AD7	C	149	159	Right-handed alpha
Helix 35	AD8	C	221	233	Right-handed alpha
Helix 36	AD9	C	234	237	Right-handed 310
Helix 37	AE1	C	238	262	Right-handed alpha
Helix 38	AE2	C	269	284	Right-handed alpha
Helix 39	AE3	C	285	294	Right-handed alpha
Helix 40	AE4	C	299	315	Right-handed alpha
Helix 41	AE5	D	18	23	Right-handed alpha
Helix 42	AE6	D	50	64	Right-handed alpha
Helix 43	AE7	D	77	88	Right-handed alpha
Helix 44	AE8	D	102	107	Right-handed alpha
Helix 45	AE9	D	126	134	Right-handed alpha
Helix 46	AF1	D	143	146	Right-handed 310
Helix 47	AF2	D	147	152	Right-handed alpha
Helix 48	AF3	D	153	156	Right-handed 310
Helix 49	AF4	D	204	209	Right-handed alpha
Helix 50	AF5	D	221	233	Right-handed alpha
Helix 51	AF6	D	234	237	Right-handed 310
Helix 52	AF7	D	238	261	Right-handed alpha
Helix 53	AF8	D	269	280	Right-handed alpha
Helix 54	AF9	D	285	294	Right-handed alpha
Helix 55	AG1	D	302	313	Right-handed alpha
Helix 56	AG2	E	18	22	Right-handed alpha
Helix 57	AG3	E	50	64	Right-handed alpha
Helix 58	AG4	E	76	87	Right-handed alpha
Helix 59	AG5	E	102	107	Right-handed alpha
Helix 60	AG6	E	126	133	Right-handed alpha
Helix 61	AG7	E	143	146	Right-handed 310
Helix 62	AG8	E	150	155	Right-handed 310
Helix 63	AG9	E	204	209	Right-handed alpha
Helix 64	AH1	E	221	233	Right-handed alpha
Helix 65	AH2	E	238	262	Right-handed alpha
Helix 66	AH3	E	269	284	Right-handed alpha
Helix 67	AH4	E	285	294	Right-handed alpha
Helix 68	AH5	E	295	298	Right-handed 310
Helix 69	AH6	E	302	314	Right-handed alpha
Helix 70	AH7	F	18	23	Right-handed alpha
Helix 71	AH8	F	50	63	Right-handed alpha
Helix 72	AH9	F	76	89	Right-handed alpha
Helix 73	AI1	F	102	107	Right-handed alpha
Helix 74	AI2	F	114	118	Right-handed 310
Helix 75	AI3	F	126	134	Right-handed alpha
Helix 76	AI4	F	143	146	Right-handed 310
Helix 77	AI5	F	147	159	Right-handed alpha
Helix 78	AI6	F	204	209	Right-handed alpha
Helix 79	AI7	F	221	233	Right-handed alpha
Helix 80	AI8	F	238	262	Right-handed alpha
Helix 81	AI9	F	269	284	Right-handed alpha
Helix 82	AJ1	F	286	294	Right-handed alpha
Helix 83	AJ2	F	295	298	Right-handed 310
Helix 84	AJ3	F	302	314	Right-handed alpha
Helix 85	AJ4	f	23	38	Right-handed alpha
Helix 86	AJ5	f	68	85	Right-handed alpha
Helix 87	AJ6	f	90	95	Right-handed alpha
Helix 88	AJ7	f	96	98	Right-handed 310
Helix 89	AJ8	f	101	124	Right-handed alpha
Helix 90	AJ9	f	126	143	Right-handed alpha
Helix 91	AK1	f	154	168	Right-handed alpha
Helix 92	AK2	f	173	177	Right-handed 310
Helix 93	AK3	f	178	199	Right-handed alpha
Helix 94	AK4	f	204	221	Right-handed alpha
Helix 95	AK5	G	331	335	Right-handed alpha
Helix 96	AK6	G	345	350	Right-handed alpha
Helix 97	AK7	G	354	369	Right-handed alpha
Helix 98	AK8	G	390	397	Right-handed alpha
Helix 99	AK9	G	429	450	Right-handed alpha
Helix 100	AL1	G	466	475	Right-handed alpha
Helix 101	AL2	G	498	502	Right-handed 310
Helix 102	AL3	G	520	534	Right-handed alpha
Helix 103	AL4	G	552	557	Right-handed alpha
Helix 104	AL5	G	560	578	Right-handed alpha
Helix 105	AL6	G	604	606	Right-handed 310
Helix 106	AL7	G	607	619	Right-handed alpha
Helix 107	AL8	I	330	335	Right-handed alpha
Helix 108	AL9	I	336	352	Right-handed alpha
Helix 109	AM1	I	354	372	Right-handed alpha
Helix 110	AM2	I	424	428	Right-handed 310
Helix 111	AM3	I	429	450	Right-handed alpha
Helix 112	AM4	I	466	474	Right-handed alpha
Helix 113	AM5	I	502	511	Right-handed 310
Helix 114	AM6	I	525	533	Right-handed alpha
Helix 115	AM7	I	553	558	Right-handed alpha
Helix 116	AM8	I	561	577	Right-handed alpha
Helix 117	AM9	I	610	620	Right-handed alpha

There are 24 sheets in PDB entry 9UKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	29	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	136	141	parallel
Strand 3	A	179	184	parallel
Strand 4	A	67	71	parallel
Strand 5	A	213	217	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	180	184	parallel
Strand 4	B	67	71	parallel
Strand 5	B	213	217	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	119	124	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	136	141	parallel
Strand 3	C	179	184	parallel
Strand 4	C	67	69	parallel
Strand 5	C	213	214	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	180	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	215	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	29	32	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	137	141	parallel
Strand 3	E	181	185	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	113	first strand
Strand 2	E	120	125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	137	141	parallel
Strand 3	F	181	184	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	113	first strand
Strand 2	F	120	125	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	43	44	first strand
Strand 2	f	57	58	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	330	first strand
Strand 2	G	487	493	parallel
Strand 3	G	452	460	anti-parallel
Strand 4	G	416	422	parallel
Strand 5	G	539	545	parallel
Strand 6	G	582	587	parallel
Strand 7	G	598	601	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	381	first strand
Strand 2	G	404	407	anti-parallel
Strand 3	G	385	386	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	487	491	first strand
Strand 2	I	452	460	anti-parallel
Strand 3	I	415	421	parallel
Strand 4	I	538	544	parallel
Strand 5	I	583	585	parallel
Strand 6	I	598	599	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKI