Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKJ entry

There are 7 chains in PDB entry 9UKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	LEU 327
B	ALA 9	PRO 319
C	ALA 9	LEU 318
D	ALA 9	PRO 319
E	ALA 9	LEU 327
F	ALA 9	LEU 327
G	ARG 375	ASP 409

There are 88 helices in PDB entry 9UKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	23	Right-handed alpha
Helix 2	AA2	A	50	63	Right-handed alpha
Helix 3	AA3	A	76	89	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	134	Right-handed alpha
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	207	211	Right-handed 310
Helix 8	AA8	A	221	233	Right-handed alpha
Helix 9	AA9	A	234	237	Right-handed 310
Helix 10	AB1	A	238	261	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	286	294	Right-handed alpha
Helix 13	AB4	A	295	298	Right-handed 310
Helix 14	AB5	A	299	301	Right-handed 310
Helix 15	AB6	A	302	315	Right-handed alpha
Helix 16	AB7	A	321	327	Right-handed alpha
Helix 17	AB8	B	18	22	Right-handed alpha
Helix 18	AB9	B	50	64	Right-handed alpha
Helix 19	AC1	B	76	89	Right-handed alpha
Helix 20	AC2	B	102	108	Right-handed alpha
Helix 21	AC3	B	126	134	Right-handed alpha
Helix 22	AC4	B	150	160	Right-handed alpha
Helix 23	AC5	B	207	211	Right-handed 310
Helix 24	AC6	B	221	233	Right-handed alpha
Helix 25	AC7	B	234	237	Right-handed 310
Helix 26	AC8	B	238	262	Right-handed alpha
Helix 27	AC9	B	269	284	Right-handed alpha
Helix 28	AD1	B	285	294	Right-handed alpha
Helix 29	AD2	B	299	315	Right-handed alpha
Helix 30	AD3	C	18	23	Right-handed alpha
Helix 31	AD4	C	55	64	Right-handed alpha
Helix 32	AD5	C	77	88	Right-handed alpha
Helix 33	AD6	C	102	107	Right-handed alpha
Helix 34	AD7	C	127	133	Right-handed alpha
Helix 35	AD8	C	150	158	Right-handed alpha
Helix 36	AD9	C	207	211	Right-handed 310
Helix 37	AE1	C	221	232	Right-handed alpha
Helix 38	AE2	C	233	237	Right-handed 310
Helix 39	AE3	C	238	261	Right-handed alpha
Helix 40	AE4	C	269	284	Right-handed alpha
Helix 41	AE5	C	285	294	Right-handed alpha
Helix 42	AE6	C	299	314	Right-handed alpha
Helix 43	AE7	D	18	23	Right-handed alpha
Helix 44	AE8	D	50	64	Right-handed alpha
Helix 45	AE9	D	76	89	Right-handed alpha
Helix 46	AF1	D	102	107	Right-handed alpha
Helix 47	AF2	D	126	134	Right-handed alpha
Helix 48	AF3	D	143	146	Right-handed 310
Helix 49	AF4	D	149	153	Right-handed 310
Helix 50	AF5	D	154	159	Right-handed alpha
Helix 51	AF6	D	204	209	Right-handed alpha
Helix 52	AF7	D	221	233	Right-handed alpha
Helix 53	AF8	D	234	237	Right-handed 310
Helix 54	AF9	D	238	261	Right-handed alpha
Helix 55	AG1	D	269	280	Right-handed alpha
Helix 56	AG2	D	286	294	Right-handed alpha
Helix 57	AG3	D	299	315	Right-handed alpha
Helix 58	AG4	E	18	22	Right-handed alpha
Helix 59	AG5	E	50	64	Right-handed alpha
Helix 60	AG6	E	76	88	Right-handed alpha
Helix 61	AG7	E	102	107	Right-handed alpha
Helix 62	AG8	E	127	133	Right-handed alpha
Helix 63	AG9	E	143	146	Right-handed 310
Helix 64	AH1	E	150	155	Right-handed 310
Helix 65	AH2	E	204	209	Right-handed alpha
Helix 66	AH3	E	221	233	Right-handed alpha
Helix 67	AH4	E	234	237	Right-handed 310
Helix 68	AH5	E	238	262	Right-handed alpha
Helix 69	AH6	E	271	284	Right-handed alpha
Helix 70	AH7	E	285	294	Right-handed alpha
Helix 71	AH8	E	295	298	Right-handed 310
Helix 72	AH9	E	302	315	Right-handed alpha
Helix 73	AI1	F	18	22	Right-handed alpha
Helix 74	AI2	F	50	64	Right-handed alpha
Helix 75	AI3	F	76	88	Right-handed alpha
Helix 76	AI4	F	102	107	Right-handed alpha
Helix 77	AI5	F	126	134	Right-handed alpha
Helix 78	AI6	F	143	146	Right-handed 310
Helix 79	AI7	F	147	160	Right-handed alpha
Helix 80	AI8	F	204	209	Right-handed alpha
Helix 81	AI9	F	221	233	Right-handed alpha
Helix 82	AJ1	F	238	261	Right-handed alpha
Helix 83	AJ2	F	269	284	Right-handed alpha
Helix 84	AJ3	F	285	294	Right-handed alpha
Helix 85	AJ4	F	295	298	Right-handed 310
Helix 86	AJ5	F	302	315	Right-handed alpha
Helix 87	AJ6	G	388	390	Right-handed 310
Helix 88	AJ7	G	391	397	Right-handed alpha

There are 24 sheets in PDB entry 9UKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	30	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	136	141	parallel
Strand 3	A	179	185	parallel
Strand 4	A	67	71	parallel
Strand 5	A	213	217	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	124	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	118	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	181	185	parallel
Strand 4	B	67	71	parallel
Strand 5	B	213	217	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	119	124	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	180	184	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	172	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	180	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	171	173	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	29	32	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	137	141	parallel
Strand 3	E	180	185	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	113	first strand
Strand 2	E	120	125	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	137	141	parallel
Strand 3	F	180	185	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	115	first strand
Strand 2	F	118	125	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	172	173	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	381	first strand
Strand 2	G	404	407	anti-parallel
Strand 3	G	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKJ