Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKK entry

There are 10 chains in PDB entry 9UKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	TYR 219
B	GLU 5	GLU 317
C	GLU 5	LEU 318
D	GLU 5	LEU 327
E	GLU 5	LEU 318
F	ASN 10	PRO 319
H	LEU 220	GLY 315
G	ASP 317	GLU 620
d	ASP 21	ASP 220
I	HIS 315	GLU 620

There are112 helices in PDB entry 9UKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	53	64	Right-handed alpha
Helix 3	AA3	A	76	88	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	152	160	Right-handed alpha
Helix 8	AA8	A	205	210	Right-handed alpha
Helix 9	AA9	B	18	23	Right-handed alpha
Helix 10	AB1	B	50	63	Right-handed alpha
Helix 11	AB2	B	76	89	Right-handed alpha
Helix 12	AB3	B	127	134	Right-handed alpha
Helix 13	AB4	B	152	160	Right-handed alpha
Helix 14	AB5	B	205	211	Right-handed alpha
Helix 15	AB6	B	221	233	Right-handed alpha
Helix 16	AB7	B	234	237	Right-handed 310
Helix 17	AB8	B	238	240	Right-handed 310
Helix 18	AB9	B	241	262	Right-handed alpha
Helix 19	AC1	B	269	284	Right-handed alpha
Helix 20	AC2	B	286	294	Right-handed alpha
Helix 21	AC3	B	299	315	Right-handed alpha
Helix 22	AC4	C	18	23	Right-handed alpha
Helix 23	AC5	C	50	63	Right-handed alpha
Helix 24	AC6	C	76	89	Right-handed alpha
Helix 25	AC7	C	103	107	Right-handed alpha
Helix 26	AC8	C	126	134	Right-handed alpha
Helix 27	AC9	C	147	159	Right-handed alpha
Helix 28	AD1	C	207	211	Right-handed 310
Helix 29	AD2	C	223	233	Right-handed alpha
Helix 30	AD3	C	234	237	Right-handed 310
Helix 31	AD4	C	238	262	Right-handed alpha
Helix 32	AD5	C	269	279	Right-handed alpha
Helix 33	AD6	C	279	284	Right-handed alpha
Helix 34	AD7	C	285	292	Right-handed alpha
Helix 35	AD8	C	294	298	Right-handed 310
Helix 36	AD9	C	299	315	Right-handed alpha
Helix 37	AE1	D	18	23	Right-handed alpha
Helix 38	AE2	D	50	63	Right-handed alpha
Helix 39	AE3	D	78	89	Right-handed alpha
Helix 40	AE4	D	102	108	Right-handed alpha
Helix 41	AE5	D	127	134	Right-handed alpha
Helix 42	AE6	D	150	159	Right-handed alpha
Helix 43	AE7	D	206	210	Right-handed 310
Helix 44	AE8	D	221	233	Right-handed alpha
Helix 45	AE9	D	234	237	Right-handed 310
Helix 46	AF1	D	238	262	Right-handed alpha
Helix 47	AF2	D	269	284	Right-handed alpha
Helix 48	AF3	D	285	294	Right-handed alpha
Helix 49	AF4	D	295	298	Right-handed 310
Helix 50	AF5	D	299	315	Right-handed alpha
Helix 51	AF6	D	321	327	Right-handed alpha
Helix 52	AF7	E	18	23	Right-handed alpha
Helix 53	AF8	E	52	63	Right-handed alpha
Helix 54	AF9	E	76	88	Right-handed alpha
Helix 55	AG1	E	102	107	Right-handed alpha
Helix 56	AG2	E	127	134	Right-handed alpha
Helix 57	AG3	E	150	160	Right-handed alpha
Helix 58	AG4	E	204	209	Right-handed alpha
Helix 59	AG5	E	221	233	Right-handed alpha
Helix 60	AG6	E	238	262	Right-handed alpha
Helix 61	AG7	E	269	284	Right-handed alpha
Helix 62	AG8	E	286	294	Right-handed alpha
Helix 63	AG9	E	299	315	Right-handed alpha
Helix 64	AH1	F	18	23	Right-handed alpha
Helix 65	AH2	F	56	63	Right-handed alpha
Helix 66	AH3	F	76	88	Right-handed alpha
Helix 67	AH4	F	102	107	Right-handed alpha
Helix 68	AH5	F	127	132	Right-handed alpha
Helix 69	AH6	F	142	146	Right-handed 310
Helix 70	AH7	F	149	159	Right-handed alpha
Helix 71	AH8	F	221	232	Right-handed alpha
Helix 72	AH9	F	241	261	Right-handed alpha
Helix 73	AI1	F	269	284	Right-handed alpha
Helix 74	AI2	F	286	293	Right-handed alpha
Helix 75	AI3	F	299	315	Right-handed alpha
Helix 76	AI4	H	221	232	Right-handed alpha
Helix 77	AI5	H	239	262	Right-handed alpha
Helix 78	AI6	H	269	283	Right-handed alpha
Helix 79	AI7	H	286	294	Right-handed alpha
Helix 80	AI8	H	299	313	Right-handed alpha
Helix 81	AI9	G	330	335	Right-handed alpha
Helix 82	AJ1	G	336	352	Right-handed alpha
Helix 83	AJ2	G	354	368	Right-handed alpha
Helix 84	AJ3	G	424	428	Right-handed 310
Helix 85	AJ4	G	429	444	Right-handed alpha
Helix 86	AJ5	G	445	449	Right-handed 310
Helix 87	AJ6	G	466	474	Right-handed alpha
Helix 88	AJ7	G	503	511	Right-handed 310
Helix 89	AJ8	G	520	533	Right-handed alpha
Helix 90	AJ9	G	553	557	Right-handed 310
Helix 91	AK1	G	559	578	Right-handed alpha
Helix 92	AK2	G	604	620	Right-handed alpha
Helix 93	AK3	d	22	38	Right-handed alpha
Helix 94	AK4	d	68	86	Right-handed alpha
Helix 95	AK5	d	90	97	Right-handed alpha
Helix 96	AK6	d	101	124	Right-handed alpha
Helix 97	AK7	d	127	143	Right-handed alpha
Helix 98	AK8	d	144	147	Right-handed 310
Helix 99	AK9	d	155	167	Right-handed alpha
Helix 100	AL1	d	178	196	Right-handed alpha
Helix 101	AL2	d	197	201	Right-handed 310
Helix 102	AL3	d	204	220	Right-handed alpha
Helix 103	AL4	I	332	335	Right-handed 310
Helix 104	AL5	I	340	353	Right-handed alpha
Helix 105	AL6	I	354	372	Right-handed alpha
Helix 106	AL7	I	424	428	Right-handed 310
Helix 107	AL8	I	429	450	Right-handed alpha
Helix 108	AL9	I	466	474	Right-handed alpha
Helix 109	AM1	I	503	511	Right-handed 310
Helix 110	AM2	I	522	533	Right-handed alpha
Helix 111	AM3	I	560	576	Right-handed alpha
Helix 112	AM4	I	606	620	Right-handed alpha

There are 20 sheets in PDB entry 9UKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	30	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	137	140	parallel
Strand 3	A	180	185	parallel
Strand 4	A	67	70	parallel
Strand 5	A	213	216	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	180	184	parallel
Strand 4	B	67	70	parallel
Strand 5	B	213	216	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	121	125	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	181	185	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	119	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	181	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	215	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	114	first strand
Strand 2	D	119	124	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	29	32	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	181	185	parallel
Strand 4	E	67	71	parallel
Strand 5	E	213	217	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	115	first strand
Strand 2	E	118	124	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	137	141	parallel
Strand 3	F	180	184	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	328	first strand
Strand 2	G	487	493	parallel
Strand 3	G	452	460	anti-parallel
Strand 4	G	416	422	parallel
Strand 5	G	539	544	parallel
Strand 6	G	581	584	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	43	44	first strand
Strand 2	d	57	58	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	327	330	first strand
Strand 2	I	487	491	parallel
Strand 3	I	452	460	anti-parallel
Strand 4	I	415	421	parallel
Strand 5	I	538	545	parallel
Strand 6	I	583	587	parallel
Strand 7	I	599	601	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKK