Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKL entry

There are 9 chains in PDB entry 9UKL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	LEU 327
B	ALA 9	LEU 327
C	ALA 9	PRO 319
D	ALA 9	PRO 319
E	ALA 9	GLU 320
F	ALA 9	LEU 327
a	GLY 9	GLU 224
G	ASP 317	GLU 620
I	PHE 312	GLU 620

There are116 helices in PDB entry 9UKL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed alpha
Helix 2	AA2	A	51	63	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	126	134	Right-handed alpha
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	204	210	Right-handed alpha
Helix 8	AA8	A	221	232	Right-handed alpha
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	238	262	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	285	294	Right-handed alpha
Helix 13	AB4	A	299	303	Right-handed 310
Helix 14	AB5	A	304	315	Right-handed alpha
Helix 15	AB6	B	18	22	Right-handed alpha
Helix 16	AB7	B	50	63	Right-handed alpha
Helix 17	AB8	B	76	89	Right-handed alpha
Helix 18	AB9	B	102	108	Right-handed alpha
Helix 19	AC1	B	127	134	Right-handed alpha
Helix 20	AC2	B	142	146	Right-handed 310
Helix 21	AC3	B	147	159	Right-handed alpha
Helix 22	AC4	B	204	209	Right-handed alpha
Helix 23	AC5	B	221	233	Right-handed alpha
Helix 24	AC6	B	234	237	Right-handed 310
Helix 25	AC7	B	239	262	Right-handed alpha
Helix 26	AC8	B	269	284	Right-handed alpha
Helix 27	AC9	B	286	294	Right-handed alpha
Helix 28	AD1	B	305	312	Right-handed alpha
Helix 29	AD2	C	18	23	Right-handed alpha
Helix 30	AD3	C	56	63	Right-handed alpha
Helix 31	AD4	C	77	88	Right-handed alpha
Helix 32	AD5	C	102	107	Right-handed alpha
Helix 33	AD6	C	126	133	Right-handed alpha
Helix 34	AD7	C	147	158	Right-handed alpha
Helix 35	AD8	C	206	211	Right-handed alpha
Helix 36	AD9	C	221	233	Right-handed alpha
Helix 37	AE1	C	234	237	Right-handed 310
Helix 38	AE2	C	238	262	Right-handed alpha
Helix 39	AE3	C	269	284	Right-handed alpha
Helix 40	AE4	C	285	294	Right-handed alpha
Helix 41	AE5	C	299	301	Right-handed 310
Helix 42	AE6	C	302	314	Right-handed alpha
Helix 43	AE7	D	18	22	Right-handed alpha
Helix 44	AE8	D	53	64	Right-handed alpha
Helix 45	AE9	D	77	89	Right-handed alpha
Helix 46	AF1	D	102	107	Right-handed alpha
Helix 47	AF2	D	126	134	Right-handed alpha
Helix 48	AF3	D	147	152	Right-handed alpha
Helix 49	AF4	D	204	209	Right-handed alpha
Helix 50	AF5	D	221	233	Right-handed alpha
Helix 51	AF6	D	234	237	Right-handed 310
Helix 52	AF7	D	238	260	Right-handed alpha
Helix 53	AF8	D	269	280	Right-handed alpha
Helix 54	AF9	D	286	291	Right-handed alpha
Helix 55	AG1	D	299	315	Right-handed alpha
Helix 56	AG2	E	50	63	Right-handed alpha
Helix 57	AG3	E	77	89	Right-handed alpha
Helix 58	AG4	E	102	107	Right-handed alpha
Helix 59	AG5	E	126	134	Right-handed alpha
Helix 60	AG6	E	143	146	Right-handed 310
Helix 61	AG7	E	149	153	Right-handed 310
Helix 62	AG8	E	154	159	Right-handed alpha
Helix 63	AG9	E	204	209	Right-handed alpha
Helix 64	AH1	E	221	233	Right-handed alpha
Helix 65	AH2	E	234	237	Right-handed 310
Helix 66	AH3	E	240	262	Right-handed alpha
Helix 67	AH4	E	269	284	Right-handed alpha
Helix 68	AH5	E	285	294	Right-handed alpha
Helix 69	AH6	E	302	315	Right-handed alpha
Helix 70	AH7	F	18	23	Right-handed alpha
Helix 71	AH8	F	50	63	Right-handed alpha
Helix 72	AH9	F	76	88	Right-handed alpha
Helix 73	AI1	F	102	108	Right-handed alpha
Helix 74	AI2	F	126	134	Right-handed alpha
Helix 75	AI3	F	143	146	Right-handed 310
Helix 76	AI4	F	147	160	Right-handed alpha
Helix 77	AI5	F	204	209	Right-handed alpha
Helix 78	AI6	F	221	231	Right-handed alpha
Helix 79	AI7	F	238	261	Right-handed alpha
Helix 80	AI8	F	269	284	Right-handed alpha
Helix 81	AI9	F	285	294	Right-handed alpha
Helix 82	AJ1	F	295	298	Right-handed 310
Helix 83	AJ2	F	302	312	Right-handed alpha
Helix 84	AJ3	a	22	38	Right-handed alpha
Helix 85	AJ4	a	68	88	Right-handed alpha
Helix 86	AJ5	a	90	97	Right-handed alpha
Helix 87	AJ6	a	101	124	Right-handed alpha
Helix 88	AJ7	a	127	141	Right-handed alpha
Helix 89	AJ8	a	155	168	Right-handed alpha
Helix 90	AJ9	a	178	201	Right-handed alpha
Helix 91	AK1	a	204	219	Right-handed alpha
Helix 92	AK2	G	330	335	Right-handed alpha
Helix 93	AK3	G	337	352	Right-handed alpha
Helix 94	AK4	G	354	365	Right-handed alpha
Helix 95	AK5	G	391	397	Right-handed alpha
Helix 96	AK6	G	411	416	Right-handed 310
Helix 97	AK7	G	429	447	Right-handed alpha
Helix 98	AK8	G	448	450	Right-handed 310
Helix 99	AK9	G	466	474	Right-handed alpha
Helix 100	AL1	G	498	503	Right-handed alpha
Helix 101	AL2	G	504	510	Right-handed 310
Helix 102	AL3	G	519	532	Right-handed alpha
Helix 103	AL4	G	560	578	Right-handed alpha
Helix 104	AL5	G	603	611	Right-handed alpha
Helix 105	AL6	G	613	619	Right-handed alpha
Helix 106	AL7	I	332	335	Right-handed 310
Helix 107	AL8	I	336	352	Right-handed alpha
Helix 108	AL9	I	354	368	Right-handed alpha
Helix 109	AM1	I	429	444	Right-handed alpha
Helix 110	AM2	I	445	450	Right-handed alpha
Helix 111	AM3	I	466	475	Right-handed alpha
Helix 112	AM4	I	503	510	Right-handed 310
Helix 113	AM5	I	519	534	Right-handed alpha
Helix 114	AM6	I	561	576	Right-handed alpha
Helix 115	AM7	I	605	611	Right-handed alpha
Helix 116	AM8	I	611	620	Right-handed alpha

There are 24 sheets in PDB entry 9UKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	29	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	137	141	parallel
Strand 3	A	181	184	parallel
Strand 4	A	67	71	parallel
Strand 5	A	213	217	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	29	32	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	137	141	parallel
Strand 3	B	181	184	parallel
Strand 4	B	66	70	parallel
Strand 5	B	213	216	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	119	124	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	29	32	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	137	141	parallel
Strand 3	C	181	185	parallel
Strand 4	C	67	70	parallel
Strand 5	C	213	216	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	29	32	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	137	141	parallel
Strand 3	D	181	185	parallel
Strand 4	D	67	70	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	30	32	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	137	141	parallel
Strand 3	E	180	184	parallel
Strand 4	E	67	70	parallel
Strand 5	E	213	216	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	115	first strand
Strand 2	E	118	125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	29	32	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	137	141	parallel
Strand 3	F	181	185	parallel
Strand 4	F	67	70	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	115	first strand
Strand 2	F	118	124	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	43	46	first strand
Strand 2	a	57	60	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	329	first strand
Strand 2	G	488	493	parallel
Strand 3	G	453	458	anti-parallel
Strand 4	G	417	422	parallel
Strand 5	G	542	545	parallel
Strand 6	G	584	587	parallel
Strand 7	G	598	601	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	327	330	first strand
Strand 2	I	487	491	parallel
Strand 3	I	456	460	anti-parallel
Strand 4	I	416	421	parallel
Strand 5	I	452	453	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	327	330	first strand
Strand 2	I	487	491	parallel
Strand 3	I	456	460	anti-parallel
Strand 4	I	416	421	parallel
Strand 5	I	539	544	parallel
Strand 6	I	582	585	parallel
Strand 7	I	598	599	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKL