Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UKM entry

There are 9 chains in PDB entry 9UKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 125	ALA 564
B	GLU 125	ALA 564
C	GLU 125	ALA 564
D	GLU 125	ALA 564
E	GLU 125	ALA 564
F	GLU 125	ALA 564
G	GLU 125	ALA 564
H	SER 135	ASN 203
I	ILE 70	GLN 382

There are 62 helices in PDB entry 9UKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	130	Right-handed 310
Helix 2	AA2	A	219	224	Right-handed alpha
Helix 3	AA3	A	332	342	Right-handed alpha
Helix 4	AA4	A	345	373	Right-handed alpha
Helix 5	AA5	A	389	413	Right-handed alpha
Helix 6	AA6	A	424	432	Right-handed alpha
Helix 7	AA7	A	466	476	Right-handed alpha
Helix 8	AA8	A	536	539	Right-handed 310
Helix 9	AA9	B	220	224	Right-handed alpha
Helix 10	AB1	B	332	342	Right-handed alpha
Helix 11	AB2	B	345	374	Right-handed alpha
Helix 12	AB3	B	389	413	Right-handed alpha
Helix 13	AB4	B	424	432	Right-handed alpha
Helix 14	AB5	B	466	476	Right-handed alpha
Helix 15	AB6	B	536	539	Right-handed 310
Helix 16	AB7	C	220	224	Right-handed alpha
Helix 17	AB8	C	332	342	Right-handed alpha
Helix 18	AB9	C	345	373	Right-handed alpha
Helix 19	AC1	C	389	413	Right-handed alpha
Helix 20	AC2	C	423	431	Right-handed alpha
Helix 21	AC3	C	466	476	Right-handed alpha
Helix 22	AC4	C	537	539	Right-handed 310
Helix 23	AC5	D	129	133	Right-handed 310
Helix 24	AC6	D	220	224	Right-handed alpha
Helix 25	AC7	D	332	343	Right-handed alpha
Helix 26	AC8	D	345	373	Right-handed alpha
Helix 27	AC9	D	389	413	Right-handed alpha
Helix 28	AD1	D	424	431	Right-handed alpha
Helix 29	AD2	D	466	476	Right-handed alpha
Helix 30	AD3	D	536	539	Right-handed 310
Helix 31	AD4	E	152	156	Right-handed 310
Helix 32	AD5	E	221	223	Right-handed 310
Helix 33	AD6	E	332	343	Right-handed alpha
Helix 34	AD7	E	345	374	Right-handed alpha
Helix 35	AD8	E	389	413	Right-handed alpha
Helix 36	AD9	E	424	432	Right-handed alpha
Helix 37	AE1	E	466	476	Right-handed alpha
Helix 38	AE2	E	537	541	Right-handed 310
Helix 39	AE3	F	248	250	Right-handed 310
Helix 40	AE4	F	331	342	Right-handed alpha
Helix 41	AE5	F	345	374	Right-handed alpha
Helix 42	AE6	F	389	413	Right-handed alpha
Helix 43	AE7	F	423	431	Right-handed alpha
Helix 44	AE8	F	466	476	Right-handed alpha
Helix 45	AE9	F	536	539	Right-handed 310
Helix 46	AF1	G	129	133	Right-handed 310
Helix 47	AF2	G	152	154	Right-handed 310
Helix 48	AF3	G	332	341	Right-handed alpha
Helix 49	AF4	G	345	374	Right-handed alpha
Helix 50	AF5	G	389	413	Right-handed alpha
Helix 51	AF6	G	423	433	Right-handed alpha
Helix 52	AF7	G	466	476	Right-handed alpha
Helix 53	AF8	G	536	539	Right-handed 310
Helix 54	AF9	H	136	201	Right-handed alpha
Helix 55	AG1	I	76	92	Right-handed alpha
Helix 56	AG2	I	139	141	Right-handed 310
Helix 57	AG3	I	175	180	Right-handed alpha
Helix 58	AG4	I	188	236	Right-handed alpha
Helix 59	AG5	I	237	283	Right-handed alpha
Helix 60	AG6	I	305	316	Right-handed alpha
Helix 61	AG7	I	356	374	Right-handed alpha
Helix 62	AG8	I	376	380	Right-handed 310

There are 47 sheets in PDB entry 9UKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	143	first strand
Strand 2	F	166	175	parallel
Strand 3	F	310	319	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	499	511	parallel
Strand 3	A	519	532	anti-parallel
Strand 4	A	322	331	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	166	175	anti-parallel
Strand 3	A	317	319	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	166	175	anti-parallel
Strand 3	B	142	143	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	206	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	236	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	264	272	anti-parallel
Strand 4	A	252	258	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	541	547	parallel
Strand 3	A	485	491	anti-parallel
Strand 4	A	416	423	anti-parallel
Strand 5	A	460	465	parallel
Strand 6	A	452	456	anti-parallel
Strand 7	A	438	440	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	499	511	parallel
Strand 3	B	519	532	anti-parallel
Strand 4	B	322	331	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	166	175	anti-parallel
Strand 3	B	317	319	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	314	first strand
Strand 2	B	166	175	anti-parallel
Strand 3	C	138	143	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	206	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	236	239	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	264	272	anti-parallel
Strand 4	B	252	258	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	541	547	parallel
Strand 3	B	484	491	anti-parallel
Strand 4	B	416	423	anti-parallel
Strand 5	B	460	465	parallel
Strand 6	B	451	456	anti-parallel
Strand 7	B	438	440	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	499	511	parallel
Strand 3	C	519	532	anti-parallel
Strand 4	C	322	331	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	319	first strand
Strand 2	C	166	175	anti-parallel
Strand 3	D	138	143	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	206	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	236	239	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	219	first strand
Strand 2	C	277	282	anti-parallel
Strand 3	C	264	272	anti-parallel
Strand 4	C	252	258	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	381	first strand
Strand 2	C	541	547	parallel
Strand 3	C	484	490	anti-parallel
Strand 4	C	417	422	anti-parallel
Strand 5	C	460	464	parallel
Strand 6	C	451	456	anti-parallel
Strand 7	C	438	440	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	385	first strand
Strand 2	C	553	555	anti-parallel
Strand 3	C	560	561	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	499	511	parallel
Strand 3	D	519	532	anti-parallel
Strand 4	D	322	331	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	319	first strand
Strand 2	D	165	171	anti-parallel
Strand 3	E	137	143	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	310	311	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	206	first strand
Strand 2	D	292	297	anti-parallel
Strand 3	D	236	239	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	219	first strand
Strand 2	D	277	282	anti-parallel
Strand 3	D	264	272	anti-parallel
Strand 4	D	252	258	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	381	first strand
Strand 2	D	541	547	parallel
Strand 3	D	484	488	anti-parallel
Strand 4	D	419	423	anti-parallel
Strand 5	D	460	465	parallel
Strand 6	D	451	456	anti-parallel
Strand 7	D	438	440	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	385	first strand
Strand 2	D	553	554	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	499	512	parallel
Strand 3	E	519	532	anti-parallel
Strand 4	E	322	331	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	319	first strand
Strand 2	E	166	175	anti-parallel
Strand 3	F	139	143	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	206	first strand
Strand 2	E	292	298	anti-parallel
Strand 3	E	230	239	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	219	first strand
Strand 2	E	277	282	anti-parallel
Strand 3	E	264	271	anti-parallel
Strand 4	E	254	258	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	381	first strand
Strand 2	E	542	547	parallel
Strand 3	E	484	490	anti-parallel
Strand 4	E	417	423	anti-parallel
Strand 5	E	460	465	parallel
Strand 6	E	451	456	anti-parallel
Strand 7	E	438	440	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	384	385	first strand
Strand 2	E	553	555	anti-parallel
Strand 3	E	560	561	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	499	515	parallel
Strand 3	F	519	532	anti-parallel
Strand 4	F	322	329	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	206	first strand
Strand 2	F	292	297	anti-parallel
Strand 3	F	236	239	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	218	first strand
Strand 2	F	277	282	anti-parallel
Strand 3	F	264	272	anti-parallel
Strand 4	F	252	258	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	377	381	first strand
Strand 2	F	541	547	parallel
Strand 3	F	484	488	anti-parallel
Strand 4	F	419	422	anti-parallel
Strand 5	F	460	464	parallel
Strand 6	F	451	456	anti-parallel
Strand 7	F	438	440	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	384	385	first strand
Strand 2	F	553	554	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	158	first strand
Strand 2	G	499	511	parallel
Strand 3	G	519	532	anti-parallel
Strand 4	G	322	331	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	168	first strand
Strand 2	G	317	319	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	G	310	311	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	206	first strand
Strand 2	G	292	297	anti-parallel
Strand 3	G	236	239	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	219	first strand
Strand 2	G	277	282	anti-parallel
Strand 3	G	264	272	anti-parallel
Strand 4	G	253	258	anti-parallel

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There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	381	first strand
Strand 2	G	541	547	parallel
Strand 3	G	484	491	anti-parallel
Strand 4	G	416	422	anti-parallel
Strand 5	G	460	464	parallel
Strand 6	G	451	456	anti-parallel
Strand 7	G	438	440	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	384	385	first strand
Strand 2	G	553	555	anti-parallel
Strand 3	G	560	561	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	162	170	anti-parallel
Strand 3	I	143	149	anti-parallel
Strand 4	I	130	137	anti-parallel
Strand 5	I	124	125	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	120	first strand
Strand 2	I	130	137	anti-parallel
Strand 3	I	143	149	anti-parallel
Strand 4	I	162	170	anti-parallel
Strand 5	I	173	174	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	319	320	first strand
Strand 2	I	327	331	anti-parallel
Strand 3	I	336	342	anti-parallel
Strand 4	I	346	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKM