Analysis of interatomic Contacts of Structural Units in PDB entry:
9UKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UKZ entry

There are 3 chains in PDB entry 9UKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 193MET 425
B
 GLY 193MET 425
C
 GLY 193ASP 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9UKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
203 208Right-handed alpha
Helix 2
AA2
A
208 213Right-handed alpha
Helix 3
AA3
A
232 241Right-handed alpha
Helix 4
AA4
A
243 249Right-handed alpha
Helix 5
AA5
A
253 269Right-handed alpha
Helix 6
AA6
A
313 330Right-handed alpha
Helix 7
AA7
A
404 418Right-handed alpha
Helix 8
AA8
B
205 215Right-handed alpha
Helix 9
AA9
B
233 241Right-handed alpha
Helix 10
AB1
B
242 248Right-handed alpha
Helix 11
AB2
B
254 269Right-handed alpha
Helix 12
AB3
B
313 330Right-handed alpha
Helix 13
AB4
B
334 339Right-handed 310
Helix 14
AB5
B
402 418Right-handed alpha
Helix 15
AB6
C
205 213Right-handed alpha
Helix 16
AB7
C
232 241Right-handed alpha
Helix 17
AB8
C
242 248Right-handed alpha
Helix 18
AB9
C
254 269Right-handed alpha
Helix 19
AC1
C
313 330Right-handed alpha
Helix 20
AC2
C
334 339Right-handed 310
Helix 21
AC3
C
402 418Right-handed alpha
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There are 5 sheets in PDB entry 9UKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
391 396anti-parallel
Strand 3
A
366 370anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
389 393anti-parallel
Strand 3
B
369 374anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 380first strand
Strand 2
B
383 384anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 373first strand
Strand 2
C
390 393anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 379first strand
Strand 2
C
384 386anti-parallel
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