Analysis of interatomic Contacts of Structural Units in PDB entry:
9UM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UM5 entry

There are 4 chains in PDB entry 9UM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 43GLU 301
B
 ALA 41PHE 299
C
 ALA 42GLU 301
D
 ASP 43LEU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9UM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 59Right-handed alpha
Helix 2
AA2
A
104 109Right-handed 310
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
133 151Right-handed alpha
Helix 5
AA5
A
154 156Right-handed 310
Helix 6
AA6
A
169 174Right-handed alpha
Helix 7
AA7
A
174 182Right-handed alpha
Helix 8
AA8
A
223 231Right-handed alpha
Helix 9
AA9
A
247 251Right-handed 310
Helix 10
AB1
A
253 269Right-handed alpha
Helix 11
AB2
A
271 273Right-handed 310
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
A
282 286Right-handed 310
Helix 14
AB5
B
53 59Right-handed alpha
Helix 15
AB6
B
104 109Right-handed 310
Helix 16
AB7
B
110 117Right-handed alpha
Helix 17
AB8
B
133 151Right-handed alpha
Helix 18
AB9
B
152 156Right-handed 310
Helix 19
AC1
B
169 174Right-handed alpha
Helix 20
AC2
B
174 182Right-handed alpha
Helix 21
AC3
B
223 231Right-handed alpha
Helix 22
AC4
B
247 251Right-handed 310
Helix 23
AC5
B
253 269Right-handed alpha
Helix 24
AC6
B
271 273Right-handed 310
Helix 25
AC7
B
274 279Right-handed alpha
Helix 26
AC8
C
53 59Right-handed alpha
Helix 27
AC9
C
104 109Right-handed 310
Helix 28
AD1
C
110 117Right-handed alpha
Helix 29
AD2
C
133 151Right-handed alpha
Helix 30
AD3
C
154 156Right-handed 310
Helix 31
AD4
C
169 174Right-handed alpha
Helix 32
AD5
C
174 182Right-handed alpha
Helix 33
AD6
C
223 231Right-handed alpha
Helix 34
AD7
C
247 251Right-handed 310
Helix 35
AD8
C
253 269Right-handed alpha
Helix 36
AD9
C
271 273Right-handed 310
Helix 37
AE1
C
274 279Right-handed alpha
Helix 38
AE2
D
53 58Right-handed alpha
Helix 39
AE3
D
104 109Right-handed 310
Helix 40
AE4
D
110 117Right-handed alpha
Helix 41
AE5
D
133 151Right-handed alpha
Helix 42
AE6
D
154 156Right-handed 310
Helix 43
AE7
D
169 174Right-handed alpha
Helix 44
AE8
D
174 182Right-handed alpha
Helix 45
AE9
D
223 231Right-handed alpha
Helix 46
AF1
D
247 251Right-handed 310
Helix 47
AF2
D
253 269Right-handed alpha
Helix 48
AF3
D
271 273Right-handed 310
Helix 49
AF4
D
274 279Right-handed alpha
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There are 4 sheets in PDB entry 9UM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
92 98parallel
Strand 5
A
158 168parallel
Strand 6
A
187 191parallel
Strand 7
A
207 212parallel
Strand 8
A
236 241parallel
Strand 9
A
290 295anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
121 126anti-parallel
Strand 4
B
92 98parallel
Strand 5
B
158 168parallel
Strand 6
B
187 191parallel
Strand 7
B
207 212parallel
Strand 8
B
236 241parallel
Strand 9
B
290 295anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
79 85anti-parallel
Strand 3
C
121 126anti-parallel
Strand 4
C
92 98parallel
Strand 5
C
158 168parallel
Strand 6
C
187 191parallel
Strand 7
C
207 212parallel
Strand 8
C
236 241parallel
Strand 9
C
290 295anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 70first strand
Strand 2
D
80 85anti-parallel
Strand 3
D
121 125anti-parallel
Strand 4
D
92 98parallel
Strand 5
D
158 168parallel
Strand 6
D
187 191parallel
Strand 7
D
207 212parallel
Strand 8
D
236 241parallel
Strand 9
D
290 295anti-parallel
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